Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813404 . T A CCDS2543.1:NM_000030.2:c.605aTc>aAc_NP_000021.1:p.202I>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ILE A:202 A:202 1.0 0.006 E -133.7 126.6 1.0 0.006 0.0 HOH
 5.831
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ILE A:202 A:202 1.0 0.006 E -138.6 117.0 1.0 0.006 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:202 A:202 3.0 0.017 E -121.5 121.0 3.0 0.017 0.0 HOH
 9.262
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:202 A:202 2.0 0.011 E -129.7 118.7 2.0 0.011 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ILE A:204 A:202 0.0 0.0 E -133.0 120.6 0.0 0.0 0.0 HOH
 5.948
 N
 O
ILE C:204 C:202 0.0 0.0 E -134.8 126.0 0.0 0.0 0.0 HOH
 5.910
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ILE A:202 A:202 1.0 0.006 E -127.2 119.4 1.0 0.006 0.0 HOH
 7.328
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ILE A:204 A:202 0.0 0.0 E -135.5 124.5 0.0 0.0 0.0 HOH
 6.010
 N
 O
ILE B:204 C:202 0.0 0.0 E -133.3 125.7 0.0 0.0 0.0 HOH
 6.190
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ILE A:204 A:202 0.0 0.0 E -142.9 134.7 0.0 0.0 0.0
ILE B:204 B:202 0.0 0.0 E -143.3 134.5 0.0 0.0 0.0
ILE C:204 C:202 0.0 0.0 E -142.2 134.6 NA NA NA
ILE D:204 D:202 0.0 0.0 E -143.4 134.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ILE A:202 A:202 0.0 0.0 E -136.0 119.5 0.0 0.0 0.0 HOH
 6.417
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ILE A:213 A:202 0.0 0.0 E -134.0 125.3 0.0 0.0 0.0 HOH
 6.192
 N
 O
ILE B:213 B:202 0.0 0.0 E -131.1 129.3 0.0 0.0 0.0 HOH
 6.354
 N
 O
ILE C:213 E:202 0.0 0.0 E -130.0 126.4 NA NA NA
ILE D:213 G:202 0.0 0.0 E -132.7 126.6 NA NA NA
ILE E:213 M:202 0.0 0.0 E -132.0 126.9 NA NA NA
ILE F:213 N:202 1.0 0.006 E -130.6 127.4 NA NA NA
ILE G:213 S:202 0.0 0.0 E -136.6 128.7 NA NA NA
ILE H:213 T:202 0.0 0.0 E -130.6 127.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ILE A:204 A:202 0.0 0.0 E -136.5 125.7 0.0 0.0 0.0
ILE B:204 C:202 1.0 0.006 E -137.4 121.5 1.0 0.006 0.0 HOH
 9.511
 CA
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ILE A:202 A:202 0.0 0.0 E -130.0 113.0 0.0 0.0 0.0 HOH
 7.183
 CD1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ILE A:202 A:202 1.0 0.006 E -131.1 117.0 1.0 0.006 0.0 HOH
 9.054
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ILE A:197 A:202 0.0 0.0 E -128.6 127.3 0.0 0.0 0.0 HOH
 6.185
 N
 O
ILE B:197 B:202 0.0 0.0 E -129.3 127.1 0.0 0.0 0.0 HOH
 6.182
 N
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ILE A:197 A:202 0.0 0.0 E -131.1 129.7 0.0 0.0 0.0 HOH
 6.032
 N
 O
ILE B:197 B:202 0.0 0.0 E -129.6 125.1 0.0 0.0 0.0 HOH
 6.085
 N
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ILE A:202 A:202 0.0 0.0 E -131.2 124.5 0.0 0.0 0.0 GOL
HOH
 7.636
6.165
 N
N
 O3
O
ILE B:202 B:202 0.0 0.0 E -135.3 122.6 0.0 0.0 0.0 HOH
 6.169
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ILE A:202 A:202 0.0 0.0 E -132.7 127.7