Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813411 . C A CCDS2543.1:NM_000030.2:c.612taC>taA_NP_000021.1:p.204Y>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 TYR A:204 A:204 3.0 0.013 E -135.5 150.5 3.0 0.013 0.0 PLP
HOH
 4.799
6.330
 OH
O
 N1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 TYR A:204 A:204 1.0 0.004 E -130.8 150.3 1.0 0.004 0.0 PLP
HOH
 5.174
6.637
 OH
O
 N1
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:204 A:204 2.0 0.009 E -127.9 154.2 2.0 0.009 0.0 PMP
HOH
 5.205
5.898
 OH
O
 N1
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:204 A:204 3.0 0.013 E -130.4 151.5 3.0 0.013 0.0 PLP
 5.165
 OH
 N1
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 TYR A:206 A:204 1.0 0.004 E -139.9 154.9 1.0 0.004 0.0 HOH
 6.151
 O
 O
TYR C:206 C:204 1.0 0.004 E -141.0 153.3 1.0 0.004 0.0 HOH
 6.265
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 TYR A:204 A:204 5.0 0.022 E -129.7 152.7 5.0 0.022 0.0 PLP
HOH
 5.231
8.601
 OH
O
 N1
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 TYR A:206 A:204 0.0 0.0 E -142.1 154.5 0.0 0.0 0.0 SO4
HOH
 7.364
5.640
 CE1
OH
 O4
O
TYR B:206 C:204 0.0 0.0 E -136.5 156.3 0.0 0.0 0.0 SO4
HOH
 7.432
5.550
 CE1
OH
 O3
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 TYR A:206 A:204 3.0 0.013 E -134.7 159.6 3.0 0.013 0.0
TYR B:206 B:204 2.0 0.009 E -134.1 160.5 2.0 0.009 0.0
TYR C:206 C:204 2.0 0.009 E -134.8 160.3 NA NA NA
TYR D:206 D:204 3.0 0.013 E -135.2 160.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 TYR A:204 A:204 2.0 0.009 E -148.1 150.0 2.0 0.009 0.0 HOH
 6.379
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 TYR A:215 A:204 5.0 0.022 E -142.9 159.8 5.0 0.022 0.0 PLP
HOH
 5.219
2.689
 OH
OH
 N1
O
TYR B:215 B:204 3.0 0.013 E -140.2 157.0 3.0 0.013 0.0 PLP
HOH
 5.279
2.758
 OH
OH
 N1
O
TYR C:215 E:204 5.0 0.022 E -139.0 161.0 NA NA NA
TYR D:215 G:204 4.0 0.017 E -136.5 157.4 NA NA NA
TYR E:215 M:204 4.0 0.017 E -142.1 155.6 NA NA NA
TYR F:215 N:204 5.0 0.022 E -137.1 158.1 NA NA NA
TYR G:215 S:204 4.0 0.017 E -134.5 156.8 NA NA NA
TYR H:215 T:204 4.0 0.017 E -137.2 158.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 TYR A:206 A:204 0.0 0.0 E -139.1 156.9 0.0 0.0 0.0 SO4
HOH
 7.191
6.161
 CE1
O
 O3
O
TYR B:206 C:204 0.0 0.0 E -134.7 158.9 0.0 0.0 0.0 SO4
HOH
 7.131
6.010
 CE1
OH
 O3
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 TYR A:204 A:204 2.0 0.009 E -131.7 149.6 2.0 0.009 0.0 PLP
HOH
 4.972
7.356
 OH
OH
 N1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 TYR A:204 A:204 2.0 0.009 E -131.1 159.0 2.0 0.009 0.0 PLP
HOH
 4.736
7.903
 CE2
OH
 C6
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 TYR A:199 A:204 2.0 0.009 E -135.2 154.3 2.0 0.009 0.0 PLP
HOH
 3.468
6.142
 HE2
O
 H6
O
TYR B:199 B:204 3.0 0.013 E -134.4 159.5 3.0 0.013 0.0 PLP
HOH
 3.714
2.295
 HE2
HE2
 H6
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 TYR A:199 A:204 2.0 0.009 E -134.1 155.3 2.0 0.009 0.0 PLR
HOH
 3.286
6.151
 HE2
O
 H6
O
TYR B:199 B:204 3.0 0.013 E -134.0 158.0 3.0 0.013 0.0 PLR
HOH
 3.520
2.469
 HE2
HE2
 H6
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 TYR A:204 A:204 2.0 0.009 E -135.7 154.2 2.0 0.009 0.0 PLP
HOH
 4.845
6.287
 OH
O
 N1
O
TYR B:204 B:204 3.0 0.013 E -135.0 156.1 3.0 0.013 0.0 PLP
HOH
 5.006
6.295
 OH
O
 N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 TYR A:204 A:204 4.0 0.017 E -135.0 159.0