Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813413 . C A CCDS2543.1:NM_000030.2:c.614tCg>tAg_NP_000021.1:p.205S>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:205 A:205 1.0 0.009 E -142.6 163.8 1.0 0.009 0.0 PLP
HOH
 7.032
4.610
 C
OG
 O4P
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:205 A:205 1.0 0.009 E -136.3 178.6 1.0 0.009 0.0 PLP
HOH
 7.242
4.158
 C
OG
 O4P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:205 A:205 1.0 0.009 E -147.9 163.6 1.0 0.009 0.0 PMP
HOH
 7.574
6.044
 C
OG
 O4P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:205 A:205 1.0 0.009 E -143.1 169.1 1.0 0.009 0.0 PLP
 7.641
 C
 O4P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:207 A:205 1.0 0.009 E -151.2 168.7 1.0 0.009 0.0 HOH
 4.113
 OG
 O
SER C:207 C:205 2.0 0.017 E -146.7 176.5 2.0 0.017 0.0 HOH
 4.282
 OG
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:205 A:205 1.0 0.009 E -141.7 172.4 1.0 0.009 0.0 PLP
HOH
 7.536
4.441
 OG
OG
 O3
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:207 A:205 1.0 0.009 E -147.7 179.7 1.0 0.009 0.0 SO4
HOH
 7.014
4.210
 C
OG
 O4
O
SER B:207 C:205 2.0 0.017 E -150.5 -177.6 2.0 0.017 0.0 SO4
HOH
 7.132
4.342
 C
OG
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:207 A:205 0.0 0.0 E -162.2 142.7 0.0 0.0 0.0
SER B:207 B:205 0.0 0.0 E -162.3 144.0 0.0 0.0 0.0
SER C:207 C:205 0.0 0.0 E -163.3 144.1 NA NA NA
SER D:207 D:205 0.0 0.0 E -162.3 143.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:205 A:205 2.0 0.017 E -146.7 167.8 2.0 0.017 0.0 HOH
 4.189
 OG
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:216 A:205 1.0 0.009 E -148.9 179.7 1.0 0.009 0.0 PLP
HOH
 7.483
4.334
 O
OG
 O3P
O
SER B:216 B:205 2.0 0.017 E -146.8 -178.8 2.0 0.017 0.0 PLP
HOH
 7.574
4.235
 O
OG
 O1P
O
SER C:216 E:205 1.0 0.009 E -152.5 -179.6 NA NA NA
SER D:216 G:205 2.0 0.017 E -147.6 -176.7 NA NA NA
SER E:216 M:205 2.0 0.017 E -145.9 179.2 NA NA NA
SER F:216 N:205 1.0 0.009 E -147.5 -177.9 NA NA NA
SER G:216 S:205 1.0 0.009 E -148.4 -177.9 NA NA NA
SER H:216 T:205 2.0 0.017 E -150.2 -177.4 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:207 A:205 2.0 0.017 E -153.0 171.6 2.0 0.017 0.0 SO4
HOH
 7.459
6.926
 C
OG
 O4
O
SER B:207 C:205 1.0 0.009 E -150.1 173.2 1.0 0.009 0.0 SO4
HOH
 7.380
7.413
 C
CA
 O3
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:205 A:205 1.0 0.009 E -139.0 177.0 1.0 0.009 0.0 PLP
HOH
 6.851
4.191
 C
OG
 C5A
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:205 A:205 2.0 0.017 E -147.3 -176.4 2.0 0.017 0.0 PLP
HOH
 6.873
4.257
 C
OG
 C5A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:200 A:205 1.0 0.009 E -144.6 -177.1 1.0 0.009 0.0 PLP
HOH
 6.250
3.924
 HA
HG
 H2A2
O
SER B:200 B:205 2.0 0.017 E -149.0 179.7 2.0 0.017 0.0 PLP
HOH
 6.152
3.958
 HA
HG
 H2A2
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:200 A:205 2.0 0.017 E -144.1 -174.5 2.0 0.017 0.0 PLR
HOH
 6.183
3.914
 HA
HG
 H2A2
O
SER B:200 B:205 2.0 0.017 E -148.2 -180.0 2.0 0.017 0.0 PLR
HOH
 6.019
3.872
 HA
HG
 H2A2
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:205 A:205 2.0 0.017 E -145.8 -174.6 2.0 0.017 0.0 PLP
HOH
 7.216
4.332
 C
OG
 O4P
O
SER B:205 B:205 1.0 0.009 E -145.5 -179.2 1.0 0.009 0.0 PLP
HOH
 7.343
4.119
 C
OG
 O4P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:205 A:205 1.0 0.009 E -149.5 177.2