Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813421 . C A CCDS2543.1:NM_000030.2:c.622Cag>Aag_NP_000021.1:p.208Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:208 A:208 22.0 0.122 S -99.0 8.4 3.0 0.017 0.105 A:P21549:0.106
 PLP
AOA
HOH
 3.012
5.842
2.794
 OE1
OE1
NE2
 O2P
O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:208 A:208 26.0 0.144 S -95.8 5.9 4.0 0.022 0.122 A:P21549:0.122
 PLP
HOH
 2.563
2.608
 NE2
NE2
 O2P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:208 A:208 26.0 0.144 T -86.2 4.9 7.0 0.039 0.105 A:P21549:0.106
 PMP
HOH
 2.590
2.795
 NE2
OE1
 O2P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:208 A:208 22.0 0.122 S -88.5 6.3 3.0 0.017 0.105 A:P21549:0.106
 PLP
 2.399
 NE2
 O2P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:210 A:208 6.0 0.033 S -100.3 -1.3 0.0 0.0 0.033 C:P21549:0.033
 HOH
 2.811
 OE1
 O
GLN C:210 C:208 7.0 0.039 S -96.8 4.6 0.0 0.0 0.039 A:P21549:0.039
 HOH
 2.760
 OE1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:208 A:208 28.0 0.156 S -87.8 -7.7 6.0 0.033 0.123 A:P21549:0.122
 PLP
DIO
HOH
 2.590
5.449
2.402
 NE2
NE2
NE2
 O3P
C2
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:210 A:208 22.0 0.122 S -102.1 3.2 4.0 0.022 0.1 B:P21549:0.1
 SO4
HOH
 3.196
2.606
 NE2
NE2
 O4
O
GLN B:210 C:208 23.0 0.128 T -94.5 -3.9 5.0 0.028 0.1 A:P21549:0.1
 SO4
BME
HOH
 2.998
7.520
2.779
 NE2
CB
NE2
 O1
O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:210 A:208 6.0 0.033 H -72.6 -14.1 1.0 0.006 0.027 B:P21549:0.028
 GOL
 6.319
 OE1
 O3
GLN B:210 B:208 5.0 0.028 H -71.9 -14.7 1.0 0.006 0.022 A:P21549:0.022
 GOL
 6.823
 OE1
 O3
GLN C:210 C:208 5.0 0.028 H -69.7 -13.4 NA NA NA
GLN D:210 D:208 5.0 0.028 H -72.5 -14.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:208 A:208 3.0 0.017 S -88.9 4.6 3.0 0.017 0.0 AOA
HOH
 6.772
2.911
 OE1
NE2
 C1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:219 A:208 25.0 0.139 T -96.7 8.2 6.0 0.033 0.106 B:P21549:0.106
 PLP
HOH
 2.845
2.690
 NE2
OE1
 O3P
O
GLN B:219 B:208 25.0 0.139 S -92.2 6.8 6.0 0.033 0.106 A:P21549:0.106
 PLP
HOH
 2.939
2.832
 NE2
OE1
 O1P
O
GLN C:219 E:208 25.0 0.139 T -94.8 3.4 NA NA NA
GLN D:219 G:208 26.0 0.144 T -95.5 3.7 NA NA NA
GLN E:219 M:208 24.0 0.133 S -100.9 6.4 NA NA NA
GLN F:219 N:208 25.0 0.139 S -100.8 6.7 NA NA NA
GLN G:219 S:208 24.0 0.133 S -101.1 9.9 NA NA NA
GLN H:219 T:208 24.0 0.133 S -97.3 7.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:210 A:208 22.0 0.122 S -87.6 -7.6 2.0 0.011 0.111 B:P21549:0.111
 SO4
BME
HOH
 3.159
5.746
7.956
 NE2
NE2
O
 O4
S2
O
GLN B:210 C:208 23.0 0.128 S -96.3 -2.5 4.0 0.022 0.106 A:P21549:0.106
 SO4
HOH
 3.133
7.409
 NE2
NE2
 O1
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:208 A:208 26.0 0.144 T -97.0 10.0 3.0 0.017 0.127 A:P21549:0.128
 PLP
GOL
HOH
 2.957
4.592
2.597
 NE2
NE2
NE2
 O3P
O1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:208 A:208 20.0 0.111 S -98.1 7.9 3.0 0.017 0.094 A:P21549:0.094
 PLP
HOH
 2.745
3.054
 NE2
OE1
 O2P
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:203 A:208 25.0 0.139 S -103.4 9.9 4.0 0.022 0.117 B:P21549:0.117
 PLP
HOH
 2.051
1.955
 HE22
HE21
 O3P
O
GLN B:203 B:208 25.0 0.139 S -101.5 8.1 4.0 0.022 0.117 A:P21549:0.117
 PLP
HOH
 1.916
1.999
 HE22
HE21
 O1P
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:203 A:208 26.0 0.144 S -102.6 11.4 6.0 0.033 0.111 B:P21549:0.111
 PLR
HOH
 1.972
1.959
 HE22
HE21
 O3P
O
GLN B:203 B:208 26.0 0.144 T -97.3 7.1 5.0 0.028 0.116 A:P21549:0.117
 PLR
HOH
 1.941
2.140
 HE22
HE21
 O1P
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:208 A:208 21.0 0.117 S -100.5 5.6 3.0 0.017 0.1 B:P21549:0.1
 PLP
HOH
 2.780
2.819
 NE2
OE1
 O3P
O
GLN B:208 B:208 22.0 0.122 S -96.1 8.6 3.0 0.017 0.105 A:P21549:0.106
 PLP
HOH
 2.777
2.782
 NE2
OE1
 O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:208 A:208 29.0 0.161 T -93.9 9.1