Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813427 . G A CCDS2543.1:NM_000030.2:c.628Gcc>Acc_NP_000021.1:p.210A>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:210 A:210 9.0 0.078 T -57.4 -20.4 9.0 0.078 0.0 PLP
GOL
HOH
 8.614
7.434
2.781
 N
O
N
 O3
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:210 A:210 8.0 0.07 T -58.6 -21.3 8.0 0.07 0.0 PLP
HOH
 8.825
3.024
 N
N
 O3
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:210 A:210 7.0 0.061 T -81.7 -5.8 7.0 0.061 0.0 PMP
HOH
 8.388
7.345
 N
N
 O3
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:210 A:210 7.0 0.061 T -83.3 -1.5 7.0 0.061 0.0 PLP
 8.362
 N
 O3
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:212 A:210 7.0 0.061 T -62.6 -18.6 7.0 0.061 0.0 HOH
 2.692
 O
 O
ALA C:212 C:210 8.0 0.07 T -61.8 -22.8 8.0 0.07 0.0 HOH
 2.700
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:210 A:210 7.0 0.061 T -63.8 -13.8 7.0 0.061 0.0 PLP
HOH
 8.019
2.744
 N
N
 O3
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:212 A:210 9.0 0.078 T -69.3 -20.4 9.0 0.078 0.0 HOH
 2.578
 O
 O
ALA B:212 C:210 10.0 0.087 T -65.4 -23.3 10.0 0.087 0.0 HOH
 2.679
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:212 A:210 4.0 0.035 H -112.3 -34.8 4.0 0.035 0.0
ALA B:212 B:210 5.0 0.043 H -111.9 -35.7 5.0 0.043 0.0
ALA C:212 C:210 6.0 0.052 H -111.7 -35.0 NA NA NA
ALA D:212 D:210 5.0 0.043 H -112.0 -34.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:210 A:210 10.0 0.087 T -74.9 -13.5 10.0 0.087 0.0 GOL
HOH
 8.175
2.896
 O
N
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:221 A:210 9.0 0.078 T -66.2 -19.8 9.0 0.078 0.0 PLP
HOH
 8.415
2.885
 N
O
 O3
O
ALA B:221 B:210 8.0 0.07 T -63.4 -23.3 8.0 0.07 0.0 PLP
HOH
 8.447
2.842
 N
O
 C4A
O
ALA C:221 E:210 9.0 0.078 T -66.5 -20.4 NA NA NA
ALA D:221 G:210 7.0 0.061 T -63.8 -23.7 NA NA NA
ALA E:221 M:210 8.0 0.07 T -72.0 -18.5 NA NA NA
ALA F:221 N:210 9.0 0.078 T -71.9 -18.9 NA NA NA
ALA G:221 S:210 9.0 0.078 T -69.9 -20.3 NA NA NA
ALA H:221 T:210 8.0 0.07 T -67.3 -21.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:212 A:210 13.0 0.113 T -67.6 -22.3 13.0 0.113 0.0 HOH
 7.438
 CA
 O
ALA B:212 C:210 11.0 0.096 T -66.3 -22.8 11.0 0.096 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:210 A:210 5.0 0.043 T -60.9 -20.5 5.0 0.043 0.0 PLP
GOL
HOH
 8.294
9.890
3.156
 N
N
N
 C4A
O1
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:210 A:210 8.0 0.07 T -68.4 -15.2 8.0 0.07 0.0 PLP
HOH
 8.936
3.133
 N
N
 C4A
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:205 A:210 8.0 0.07 T -68.2 -15.2 8.0 0.07 0.0 PLP
HOH
 8.094
2.104
 H
H
 O3
O
ALA B:205 B:210 7.0 0.061 T -66.9 -18.9 7.0 0.061 0.0 PLP
HOH
 8.072
2.208
 H
H
 O3
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:205 A:210 7.0 0.061 T -65.9 -16.8 7.0 0.061 0.0 PLR
HOH
 8.403
2.264
 H
H
 O3
O
ALA B:205 B:210 8.0 0.07 T -67.8 -16.3 8.0 0.07 0.0 PLR
HOH
 8.351
2.275
 H
H
 O3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:210 A:210 7.0 0.061 T -68.9 -19.6 7.0 0.061 0.0 PLP
HOH
 8.683
2.714
 N
O
 O3
O
ALA B:210 B:210 7.0 0.061 T -65.1 -18.0 7.0 0.061 0.0 PLP
HOH
 8.573
2.734
 N
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:210 A:210 8.0 0.07 T -68.3 -12.8