Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813437 . C A CCDS2543.1:NM_000030.2:c.638gCc>gAc_NP_000021.1:p.213A>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:213 A:213 2.0 0.017 -107.6 158.6 2.0 0.017 0.0 PLP
GOL
HOH
 9.396
9.817
2.789
 O
N
O
 O2P
C3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:213 A:213 1.0 0.009 -87.6 164.2 1.0 0.009 0.0 PLP
HOH
 9.269
2.844
 O
O
 O2P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:213 A:213 1.0 0.009 -90.9 164.1 1.0 0.009 0.0 PMP
HOH
 9.540
2.508
 O
O
 O2P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:213 A:213 1.0 0.009 -89.9 166.5 1.0 0.009 0.0 PLP
 9.631
 O
 O2P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:215 A:213 1.0 0.009 -89.2 164.0 1.0 0.009 0.0 HOH
 2.996
 O
 O
ALA C:215 C:213 1.0 0.009 -89.4 160.7 1.0 0.009 0.0 HOH
 2.873
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:213 A:213 0.0 0.0 -93.0 168.1 0.0 0.0 0.0 PLP
HOH
 9.446
6.769
 O
N
 O3P
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:215 A:213 1.0 0.009 -85.7 163.7 1.0 0.009 0.0 HOH
 3.010
 O
 O
ALA B:215 C:213 1.0 0.009 -85.5 165.7 1.0 0.009 0.0 BME
HOH
 6.827
2.924
 C
O
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:215 A:213 1.0 0.009 -117.5 155.8 1.0 0.009 0.0
ALA B:215 B:213 1.0 0.009 -117.6 156.5 0.0 0.0 0.009 A:P21549:0.009
ALA C:215 C:213 0.0 0.0 -117.9 155.3 NA NA NA
ALA D:215 D:213 0.0 0.0 -117.7 155.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:213 A:213 2.0 0.017 -99.2 165.4 2.0 0.017 0.0 GOL
HOH
 9.441
3.009
 N
O
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:224 A:213 2.0 0.017 -95.0 161.8 2.0 0.017 0.0 PLP
HOH
 9.434
2.896
 O
O
 O3P
O
ALA B:224 B:213 2.0 0.017 -94.6 160.1 2.0 0.017 0.0 PLP
HOH
 9.515
2.963
 O
O
 O1P
O
ALA C:224 E:213 2.0 0.017 -95.9 163.9 NA NA NA
ALA D:224 G:213 2.0 0.017 -89.5 164.7 NA NA NA
ALA E:224 M:213 1.0 0.009 -96.8 165.7 NA NA NA
ALA F:224 N:213 2.0 0.017 -93.9 163.6 NA NA NA
ALA G:224 S:213 2.0 0.017 -90.8 167.1 NA NA NA
ALA H:224 T:213 2.0 0.017 -95.2 164.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:215 A:213 1.0 0.009 -95.5 164.1 0.0 0.0 0.009 B:P21549:0.009
 SO4
 9.863
 O
 O1
ALA B:215 C:213 1.0 0.009 -85.0 165.9 1.0 0.009 0.0 SO4
 9.846
 O
 O1
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:213 A:213 2.0 0.017 -87.6 166.7 2.0 0.017 0.0 PLP
HOH
 9.364
2.875
 O
O
 O3P
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:213 A:213 1.0 0.009 -96.3 167.8 1.0 0.009 0.0 PLP
HOH
 9.581
2.673
 O
O
 O2P
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:208 A:213 1.0 0.009 -87.2 164.6 1.0 0.009 0.0 PLP
HOH
 9.321
2.779
 O
O
 O3P
O
ALA B:208 B:213 1.0 0.009 -95.4 165.9 1.0 0.009 0.0 PLP
HOH
 9.223
2.802
 O
O
 O1P
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:208 A:213 1.0 0.009 -86.9 165.7 1.0 0.009 0.0 PLR
HOH
 9.337
2.771
 O
O
 O3P
O
ALA B:208 B:213 1.0 0.009 -96.4 167.1 1.0 0.009 0.0 PLR
HOH
 9.315
2.820
 O
O
 O1P
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:213 A:213 1.0 0.009 -95.4 166.4 1.0 0.009 0.0 PLP
HOH
 9.400
2.666
 O
O
 O3P
O
ALA B:213 B:213 1.0 0.009 -91.7 166.1 1.0 0.009 0.0 PLP
HOH
 9.436
2.751
 O
O
 O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:213 A:213 2.0 0.017 -91.4 158.9