Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813452 . C A CCDS2543.1:NM_000030.2:c.653tCg>tAg_NP_000021.1:p.218S>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:218 A:218 0.0 0.0 E -153.1 155.0 0.0 0.0 0.0 PLP
HOH
 6.363
5.045
 CB
N
 O2P
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:218 A:218 0.0 0.0 E -154.7 156.4 0.0 0.0 0.0 PLP
HOH
 6.537
5.176
 CB
CB
 O2P
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:218 A:218 0.0 0.0 E -143.4 157.7 0.0 0.0 0.0 PMP
HOH
 7.086
5.292
 CB
N
 O2P
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:218 A:218 1.0 0.009 E -143.4 153.5 1.0 0.009 0.0 PLP
 7.159
 CB
 O1P
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:220 A:218 0.0 0.0 E -143.8 159.1 0.0 0.0 0.0 HOH
 4.755
 N
 O
SER C:220 C:218 0.0 0.0 E -145.7 154.4 0.0 0.0 0.0 HOH
 4.696
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:218 A:218 0.0 0.0 E -137.6 161.0 0.0 0.0 0.0 PLP
HOH
 7.356
5.313
 CB
N
 O3P
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:220 A:218 0.0 0.0 E -143.5 154.4 0.0 0.0 0.0 SO4
HOH
 6.874
4.825
 CB
N
 O4
O
SER B:220 C:218 0.0 0.0 E -150.5 162.2 0.0 0.0 0.0 SO4
BME
BME
HOH
 7.125
9.492
6.928
4.799
 CB
N
O
N
 O1
C2
O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:220 A:218 0.0 0.0 E -144.2 133.4 0.0 0.0 0.0
SER B:220 B:218 0.0 0.0 E -143.0 133.2 0.0 0.0 0.0
SER C:220 C:218 0.0 0.0 E -144.5 132.0 NA NA NA
SER D:220 D:218 0.0 0.0 E -140.3 133.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:218 A:218 0.0 0.0 E -150.8 155.5 0.0 0.0 0.0 HOH
 4.697
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:229 A:218 0.0 0.0 E -141.6 162.6 0.0 0.0 0.0 PLP
HOH
 6.804
4.830
 CB
N
 O3P
O
SER B:229 B:218 0.0 0.0 E -145.1 160.1 0.0 0.0 0.0 PLP
HOH
 6.869
4.698
 CB
N
 O1P
O
SER C:229 E:218 0.0 0.0 E -146.9 163.7 NA NA NA
SER D:229 G:218 0.0 0.0 E -147.4 159.5 NA NA NA
SER E:229 M:218 0.0 0.0 E -148.5 160.3 NA NA NA
SER F:229 N:218 0.0 0.0 E -145.8 157.2 NA NA NA
SER G:229 S:218 0.0 0.0 E -145.4 158.0 NA NA NA
SER H:229 T:218 0.0 0.0 E -151.7 160.5 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:220 A:218 0.0 0.0 E -141.4 163.2 0.0 0.0 0.0 SO4
 6.904
 CB
 O1
SER B:220 C:218 0.0 0.0 E -149.5 159.4 0.0 0.0 0.0 SO4
 7.310
 CB
 O1
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:218 A:218 0.0 0.0 E -147.8 168.6 0.0 0.0 0.0 PLP
HOH
 6.648
5.125
 CB
N
 O3P
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:218 A:218 0.0 0.0 E -145.0 162.7 0.0 0.0 0.0 PLP
HOH
 6.560
4.526
 CB
N
 O2P
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:213 A:218 0.0 0.0 E -146.1 162.2 0.0 0.0 0.0 PLP
HOH
 5.772
4.112
 HB3
HB3
 O3P
O
SER B:213 B:218 0.0 0.0 E -147.1 163.4 0.0 0.0 0.0 PLP
HOH
 5.785
4.137
 HB3
HB3
 O1P
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:213 A:218 0.0 0.0 E -145.1 162.5 0.0 0.0 0.0 PLR
HOH
 5.692
4.247
 HB3
HB3
 O3P
O
SER B:213 B:218 0.0 0.0 E -149.7 160.2 0.0 0.0 0.0 PLR
HOH
 5.718
4.188
 HB3
HB3
 O1P
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:218 A:218 0.0 0.0 E -143.2 163.8 0.0 0.0 0.0 PLP
HOH
 6.697
4.747
 CB
N
 O3P
O
SER B:218 B:218 0.0 0.0 E -146.0 161.8 0.0 0.0 0.0 PLP
HOH
 6.790
4.700
 CB
N
 O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:218 A:218 0.0 0.0 E -140.5 149.6