Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813457 . A C CCDS2543.1:NM_000030.2:c.658Atc>Ctc_NP_000021.1:p.220I>L Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ILE A:220 A:220 0.0 0.0 E -144.4 146.5 0.0 0.0 0.0 HOH
 8.028
 CG2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ILE A:220 A:220 0.0 0.0 E -144.9 149.3 0.0 0.0 0.0 HOH
 9.404
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:220 A:220 0.0 0.0 E -145.9 144.1 0.0 0.0 0.0 HOH
 8.431
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:220 A:220 1.0 0.006 E -138.4 141.8 1.0 0.006 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ILE A:222 A:220 0.0 0.0 E -145.1 150.2 0.0 0.0 0.0 HOH
 7.650
 CG2
 O
ILE C:222 C:220 0.0 0.0 E -136.9 148.0 0.0 0.0 0.0 HOH
 7.606
 CG2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ILE A:220 A:220 0.0 0.0 E -151.9 144.1 0.0 0.0 0.0 HOH
 8.002
 CG2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ILE A:222 A:220 0.0 0.0 E -152.0 147.7 0.0 0.0 0.0 HOH
 7.729
 CG2
 O
ILE B:222 C:220 0.0 0.0 E -148.4 141.2 0.0 0.0 0.0 BME
HOH
 7.710
8.426
 CG2
O
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ILE A:222 A:220 0.0 0.0 E -145.7 150.7 0.0 0.0 0.0
ILE B:222 B:220 0.0 0.0 E -147.7 151.4 0.0 0.0 0.0
ILE C:222 C:220 0.0 0.0 E -144.6 151.8 NA NA NA
ILE D:222 D:220 0.0 0.0 E -148.4 148.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ILE A:220 A:220 0.0 0.0 E -154.0 147.6 0.0 0.0 0.0 HOH
 7.790
 CG2
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ILE A:231 A:220 0.0 0.0 E -149.4 149.8 0.0 0.0 0.0 HOH
 7.797
 CG2
 O
ILE B:231 B:220 0.0 0.0 E -148.3 148.5 0.0 0.0 0.0 HOH
 7.712
 CG2
 O
ILE C:231 E:220 0.0 0.0 E -148.2 151.1 NA NA NA
ILE D:231 G:220 0.0 0.0 E -147.1 152.3 NA NA NA
ILE E:231 M:220 0.0 0.0 E -147.6 148.4 NA NA NA
ILE F:231 N:220 0.0 0.0 E -145.7 150.5 NA NA NA
ILE G:231 S:220 0.0 0.0 E -145.0 150.4 NA NA NA
ILE H:231 T:220 0.0 0.0 E -143.6 153.1 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ILE A:222 A:220 0.0 0.0 E -153.6 146.9 0.0 0.0 0.0
ILE B:222 C:220 0.0 0.0 E -152.4 152.9 0.0 0.0 0.0 HOH
 8.275
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ILE A:220 A:220 0.0 0.0 E -152.1 150.5 0.0 0.0 0.0 HOH
 7.642
 CG2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ILE A:220 A:220 0.0 0.0 E -147.9 146.4 0.0 0.0 0.0 HOH
 7.841
 CG2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ILE A:215 A:220 0.0 0.0 E -148.4 145.3 0.0 0.0 0.0 HOH
 7.103
 HG21
 O
ILE B:215 B:220 0.0 0.0 E -148.3 146.1 0.0 0.0 0.0 HOH
 7.059
 HG21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ILE A:215 A:220 0.0 0.0 E -148.9 146.8 0.0 0.0 0.0 HOH
 7.124
 HG21
 O
ILE B:215 B:220 0.0 0.0 E -145.7 146.4 0.0 0.0 0.0 HOH
 7.078
 HG21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ILE A:220 A:220 0.0 0.0 E -147.7 150.8 0.0 0.0 0.0 HOH
 7.830
 CG2
 O
ILE B:220 B:220 0.0 0.0 E -150.4 147.4 0.0 0.0 0.0 HOH
 7.718
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ILE A:220 A:220 0.0 0.0 E -145.1 145.6