Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813460 . T A CCDS2543.1:NM_000030.2:c.661Tcc>Acc_NP_000021.1:p.221S>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:221 A:221 0.0 0.0 E -144.3 137.6 0.0 0.0 0.0 HOH
 5.834
 OG
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:221 A:221 0.0 0.0 E -150.8 139.0 0.0 0.0 0.0 HOH
 8.585
 OG
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:221 A:221 0.0 0.0 E -141.0 137.5 0.0 0.0 0.0 HOH
 5.634
 OG
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:221 A:221 0.0 0.0 E -140.2 143.5 0.0 0.0 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:223 A:221 0.0 0.0 E -147.1 145.8 0.0 0.0 0.0 HOH
 5.636
 OG
 O
SER C:223 C:221 0.0 0.0 E -143.9 146.3 0.0 0.0 0.0 HOH
 5.967
 OG
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:221 A:221 0.0 0.0 E -140.1 145.5 0.0 0.0 0.0 HOH
 9.688
 OG
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:223 A:221 0.0 0.0 E -145.2 146.1 0.0 0.0 0.0 HOH
 5.795
 OG
 O
SER B:223 C:221 0.0 0.0 E -138.2 148.5 0.0 0.0 0.0 HOH
 5.742
 OG
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:223 A:221 0.0 0.0 E -147.9 140.8 0.0 0.0 0.0
SER B:223 B:221 0.0 0.0 E -148.2 142.9 0.0 0.0 0.0
SER C:223 C:221 0.0 0.0 E -148.7 140.8 NA NA NA
SER D:223 D:221 0.0 0.0 E -150.7 141.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:221 A:221 0.0 0.0 E -146.3 137.6 0.0 0.0 0.0 HOH
 5.888
 OG
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:232 A:221 0.0 0.0 E -146.5 147.3 0.0 0.0 0.0 HOH
 5.770
 OG
 O
SER B:232 B:221 0.0 0.0 E -149.2 146.6 0.0 0.0 0.0 HOH
 5.703
 OG
 O
SER C:232 E:221 0.0 0.0 E -146.2 148.0 NA NA NA
SER D:232 G:221 0.0 0.0 E -147.6 146.4 NA NA NA
SER E:232 M:221 0.0 0.0 E -143.7 145.3 NA NA NA
SER F:232 N:221 0.0 0.0 E -147.4 147.8 NA NA NA
SER G:232 S:221 0.0 0.0 E -146.6 151.2 NA NA NA
SER H:232 T:221 0.0 0.0 E -148.9 146.4 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:223 A:221 0.0 0.0 E -144.7 150.1 0.0 0.0 0.0
SER B:223 C:221 0.0 0.0 E -151.1 147.8 0.0 0.0 0.0 HOH
 5.503
 OG
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:221 A:221 0.0 0.0 E -148.0 140.1 0.0 0.0 0.0 HOH
 5.995
 OG
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:221 A:221 0.0 0.0 E -137.4 143.8 0.0 0.0 0.0 HOH
 5.755
 OG
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:216 A:221 0.0 0.0 E -142.1 145.4 0.0 0.0 0.0 HOH
 5.500
 HG
 O
SER B:216 B:221 0.0 0.0 E -141.4 149.8 0.0 0.0 0.0 HOH
 5.459
 HG
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:216 A:221 0.0 0.0 E -143.1 143.0 0.0 0.0 0.0 HOH
 5.541
 HG
 O
SER B:216 B:221 0.0 0.0 E -139.6 150.4 0.0 0.0 0.0 HOH
 5.410
 HG
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:221 A:221 0.0 0.0 E -145.1 146.8 0.0 0.0 0.0 GOL
HOH
 7.179
5.658
 OG
OG
 O1
O
SER B:221 B:221 0.0 0.0 E -143.1 147.7 0.0 0.0 0.0 HOH
 5.805
 OG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:221 A:221 0.0 0.0 E -141.0 147.7