Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813466 . A C CCDS2543.1:NM_000030.2:c.667Agt>Cgt_NP_000021.1:p.223S>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:223 A:223 14.0 0.122 -75.9 155.9 14.0 0.122 0.0 HOH
 3.514
 CB
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:223 A:223 14.0 0.122 -59.4 158.0 14.0 0.122 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:223 A:223 12.0 0.104 -69.1 170.4 12.0 0.104 0.0 HOH
 4.151
 C
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:223 A:223 15.0 0.13 -76.5 164.7 15.0 0.13 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:225 A:223 16.0 0.139 -71.4 164.1 16.0 0.139 0.0 HOH
 3.173
 OG
 O
SER C:225 C:223 16.0 0.139 -82.1 171.2 16.0 0.139 0.0 HOH
 3.384
 CB
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:223 A:223 15.0 0.13 -69.2 169.5 15.0 0.13 0.0 HOH
 4.776
 OG
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:225 A:223 14.0 0.122 -69.8 171.1 14.0 0.122 0.0 HOH
 3.335
 CA
 O
SER B:225 C:223 16.0 0.139 -63.4 167.6 16.0 0.139 0.0 HOH
 3.442
 CB
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:225 A:223 12.0 0.104 -78.2 172.4 12.0 0.104 0.0
SER B:225 B:223 13.0 0.113 -76.9 171.8 13.0 0.113 0.0
SER C:225 C:223 14.0 0.122 -77.6 172.4 NA NA NA
SER D:225 D:223 13.0 0.113 -78.6 172.5 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:223 A:223 15.0 0.13 -78.2 171.5 15.0 0.13 0.0 GOL
HOH
 9.424
3.427
 CB
CB
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:234 A:223 14.0 0.122 -63.8 170.2 14.0 0.122 0.0 HOH
 3.523
 CB
 O
SER B:234 B:223 14.0 0.122 -68.8 174.9 14.0 0.122 0.0 HOH
 3.475
 CB
 O
SER C:234 E:223 15.0 0.13 -67.4 169.3 NA NA NA
SER D:234 G:223 14.0 0.122 -65.8 172.4 NA NA NA
SER E:234 M:223 15.0 0.13 -68.9 171.2 NA NA NA
SER F:234 N:223 14.0 0.122 -68.5 172.9 NA NA NA
SER G:234 S:223 14.0 0.122 -67.9 172.6 NA NA NA
SER H:234 T:223 14.0 0.122 -66.4 169.1 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:225 A:223 15.0 0.13 -86.5 175.2 15.0 0.13 0.0
SER B:225 C:223 15.0 0.13 -76.4 177.2 15.0 0.13 0.0 HOH
 4.566
 C
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:223 A:223 14.0 0.122 -68.8 151.3 14.0 0.122 0.0 HOH
 3.661
 C
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:223 A:223 12.0 0.104 -65.5 167.5 12.0 0.104 0.0 HOH
 3.722
 C
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:218 A:223 13.0 0.113 -75.2 168.6 13.0 0.113 0.0 HOH
 2.656
 HB2
 O
SER B:218 B:223 14.0 0.122 -73.9 171.2 14.0 0.122 0.0 HOH
 2.606
 HB2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:218 A:223 14.0 0.122 -75.4 170.4 14.0 0.122 0.0 HOH
 2.660
 HB2
 O
SER B:218 B:223 14.0 0.122 -71.7 169.1 14.0 0.122 0.0 HOH
 2.613
 HB2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:223 A:223 14.0 0.122 -66.5 167.2 14.0 0.122 0.0 GOL
HOH
 3.537
3.519
 CA
CB
 O1
O
SER B:223 B:223 14.0 0.122 -69.7 170.5 14.0 0.122 0.0 HOH
 3.423
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:223 A:223 14.0 0.122 -65.2 163.4