Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241813472 . A C CCDS2543.1:NM_000030.2:c.673Aag>Cag_NP_000021.1:p.225K>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:225 A:225 99.0 0.495 H -69.5 -63.7 99.0 0.495 0.0 HOH
 4.402
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:225 A:225 99.0 0.495 H -59.7 -65.9 99.0 0.495 0.0
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:225 A:225 93.0 0.465 H -52.5 -53.8 93.0 0.465 0.0 HOH
 7.130
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:225 A:225 44.0 NA H -55.9 -51.5 44.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:227 A:225 118.0 0.59 H -55.6 -46.1 118.0 0.59 0.0 HOH
 2.684
 O
 O
LYS C:227 C:225 48.0 NA H -66.1 -41.7 48.0 NA NA HOH
 6.431
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:225 A:225 127.0 0.635 H -65.1 -35.9 127.0 0.635 0.0 HOH
 2.890
 CD
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:227 A:225 119.0 0.595 H -60.0 -44.4 119.0 0.595 0.0 HOH
 2.591
 O
 O
LYS B:227 C:225 117.0 0.585 H -55.5 -49.0 117.0 0.585 0.0 HOH
 2.698
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:227 A:225 116.0 0.58 H -59.3 -36.3 116.0 0.58 0.0
LYS B:227 B:225 116.0 0.58 H -57.1 -37.5 116.0 0.58 0.0
LYS C:227 C:225 111.0 0.555 H -58.1 -36.4 NA NA NA
LYS D:227 D:225 119.0 0.595 H -57.3 -36.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:225 A:225 118.0 0.59 H -59.1 -62.5 118.0 0.59 0.0 GOL
HOH
 8.513
2.756
 NZ
N
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:236 A:225 122.0 0.61 H -58.8 -46.5 122.0 0.61 0.0 HOH
 2.626
 O
 O
LYS B:236 B:225 120.0 0.6 H -64.7 -39.2 120.0 0.6 0.0 HOH
 2.742
 NZ
 O
LYS C:236 E:225 76.0 NA H -61.4 -43.5 NA NA NA
LYS D:236 G:225 114.0 0.57 H -64.4 -40.3 NA NA NA
LYS E:236 M:225 99.0 0.495 H -68.9 -38.8 NA NA NA
LYS F:236 N:225 121.0 0.605 H -64.6 -43.9 NA NA NA
LYS G:236 S:225 74.0 NA H -62.7 -42.6 NA NA NA
LYS H:236 T:225 56.0 NA H -68.0 -40.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:227 A:225 117.0 0.585 H -61.9 -49.3 117.0 0.585 0.0
LYS B:227 C:225 117.0 0.585 H -65.0 -46.7 117.0 0.585 0.0 HOH
 7.455
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:225 A:225 78.0 0.39 H -65.5 -50.2 78.0 0.39 0.0 HOH
 6.068
 NZ
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:225 A:225 114.0 0.57 H -61.2 -50.5 114.0 0.57 0.0 HOH
 6.554
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:220 A:225 116.0 0.58 H -62.8 -41.5 116.0 0.58 0.0 HOH
 2.024
 HZ2
 O
LYS B:220 B:225 114.0 0.57 H -59.7 -45.0 114.0 0.57 0.0 HOH
 2.092
 HG3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:220 A:225 118.0 0.59 H -62.8 -39.0 118.0 0.59 0.0 HOH
 2.091
 H
 O
LYS B:220 B:225 120.0 0.6 H -62.4 -43.8 120.0 0.6 0.0 HOH
 1.985
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:225 A:225 120.0 0.6 H -62.2 -39.6 120.0 0.6 0.0 GOL
HOH
 4.790
2.596
 N
O
 C1
O
LYS B:225 B:225 120.0 0.6 H -61.9 -39.6 120.0 0.6 0.0 HOH
 2.618
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:225 A:225 111.0 0.555 H -65.1 -47.6