Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241814533 . A C CCDS2543.1:NM_000030.2:c.688Atg>Ctg_NP_000021.1:p.230M>L Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 MET A:230 A:230 2.0 0.011 H -65.3 -40.0 2.0 0.011 0.0 HOH
 7.218
 CE
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 MET A:230 A:230 2.0 0.011 H -58.6 -35.6 2.0 0.011 0.0 HOH
 5.379
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 MET A:230 A:230 3.0 0.016 H -77.6 -32.8 3.0 0.016 0.0 HOH
 7.517
 CE
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 MET A:230 A:230 13.0 0.07 H -79.6 -27.1 13.0 0.07 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 MET A:232 A:230 3.0 0.016 H -61.6 -29.2 3.0 0.016 0.0 HOH
 3.045
 O
 O
MET C:232 C:230 2.0 0.011 H -72.7 -31.7 2.0 0.011 0.0 BTB
HOH
 9.619
3.053
 O
O
 O3
O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 MET A:230 A:230 9.0 0.049 H -74.6 -42.4 9.0 0.049 0.0 HOH
 9.405
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 MET A:232 A:230 3.0 0.016 H -66.7 -33.6 3.0 0.016 0.0 BTB
HOH
 8.845
3.274
 O
O
 O6
O
MET B:232 C:230 3.0 0.016 H -68.8 -34.6 3.0 0.016 0.0 BTB
HOH
 9.523
4.844
 O
O
 O4
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 MET A:232 A:230 2.0 0.011 H -68.8 -37.6 2.0 0.011 0.0
MET B:232 B:230 1.0 0.005 H -69.7 -36.0 1.0 0.005 0.0
MET C:232 C:230 1.0 0.005 H -67.5 -37.2 NA NA NA
MET D:232 D:230 2.0 0.011 H -69.9 -36.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 MET A:230 A:230 6.0 0.032 H -50.9 -40.9 6.0 0.032 0.0 HOH
 5.112
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 MET A:241 A:230 3.0 0.016 H -74.6 -29.7 3.0 0.016 0.0 BTB
HOH
 9.129
2.654
 O
O
 O6
O
MET B:241 B:230 4.0 0.022 H -65.5 -34.1 4.0 0.022 0.0 BTB
HOH
 9.204
2.726
 O
O
 O6
O
MET C:241 E:230 3.0 0.016 H -68.1 -31.1 NA NA NA
MET D:241 G:230 4.0 0.022 H -67.8 -30.8 NA NA NA
MET E:241 M:230 4.0 0.022 H -63.1 -30.6 NA NA NA
MET F:241 N:230 4.0 0.022 H -64.6 -33.2 NA NA NA
MET G:241 S:230 4.0 0.022 H -65.9 -35.1 NA NA NA
MET H:241 T:230 4.0 0.022 H -64.4 -32.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 MET A:232 A:230 3.0 0.016 H -67.8 -39.5 3.0 0.016 0.0
MET B:232 C:230 5.0 0.027 H -72.4 -41.2 5.0 0.027 0.0 HOH
 7.733
 CE
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 MET A:230 A:230 5.0 0.027 H -74.4 -40.6 5.0 0.027 0.0 HOH
 6.441
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 MET A:230 A:230 3.0 0.016 H -71.6 -38.9 3.0 0.016 0.0 HOH
 5.372
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 MET A:225 A:230 2.0 0.011 H -64.8 -28.7 2.0 0.011 0.0 HOH
 2.656
 O
 O
MET B:225 B:230 3.0 0.016 H -69.2 -31.8 3.0 0.016 0.0 HOH
 2.985
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 MET A:225 A:230 2.0 0.011 H -63.4 -28.6 2.0 0.011 0.0 HOH
 2.766
 O
 O
MET B:225 B:230 3.0 0.016 H -69.2 -32.2 3.0 0.016 0.0 HOH
 2.892
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 MET A:230 A:230 3.0 0.016 H -67.3 -29.4 3.0 0.016 0.0 BTB
HOH
 9.402
4.862
 O
O
 C8
O
MET B:230 B:230 2.0 0.011 H -66.5 -28.5 2.0 0.011 0.0 BTB
GOL
HOH
 9.318
8.404
2.542
 O
O
O
 C8
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 MET A:230 A:230 1.0 0.005 H -65.1 -34.1