Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241814538 . C A CCDS2543.1:NM_000030.2:c.693taC>taA_NP_000021.1:p.231Y>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 TYR A:231 A:231 93.0 0.404 T -83.6 11.7 93.0 0.404 0.0 HOH
 2.666
 OH
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 TYR A:231 A:231 98.0 0.426 H -82.2 -9.0 98.0 0.426 0.0 HOH
 2.948
 OH
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:231 A:231 80.0 0.348 T -99.2 25.3 80.0 0.348 0.0 HOH
 8.568
 CE1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:231 A:231 111.0 0.483 T -99.2 11.6 111.0 0.483 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 TYR A:233 A:231 78.0 0.339 H -92.5 -7.8 78.0 0.339 0.0 HOH
 2.646
 OH
 O
TYR C:233 C:231 70.0 0.304 H -87.8 -15.3 70.0 0.304 0.0 BTB
HOH
 7.181
2.908
 CE2
OH
 O3
O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 TYR A:231 A:231 106.0 0.461 H -74.0 -17.5 106.0 0.461 0.0 HOH
 5.985
 OH
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 TYR A:233 A:231 74.0 0.322 T -89.1 5.4 74.0 0.322 0.0 BTB
HOH
 6.708
2.590
 OH
OH
 C1
O
TYR B:233 C:231 78.0 0.339 H -89.7 -1.2 78.0 0.339 0.0 BTB
HOH
 6.269
2.469
 OH
OH
 O8
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 TYR A:233 A:231 63.0 0.274 T -88.9 -1.2 63.0 0.274 0.0
TYR B:233 B:231 60.0 0.261 T -91.4 0.8 60.0 0.261 0.0
TYR C:233 C:231 62.0 0.27 T -90.8 2.2 NA NA NA
TYR D:233 D:231 66.0 0.287 T -90.5 0.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 TYR A:231 A:231 84.0 0.365 H -84.3 -12.0 84.0 0.365 0.0 HOH
 2.570
 OH
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 TYR A:242 A:231 82.0 0.357 H -89.6 -3.0 82.0 0.357 0.0 BTB
HOH
 5.967
2.641
 CE2
OH
 O6
O
TYR B:242 B:231 82.0 0.357 H -86.5 -1.6 82.0 0.357 0.0 BTB
HOH
 6.049
2.601
 CE2
OH
 O6
O
TYR C:242 E:231 82.0 0.357 H -86.5 -5.5 NA NA NA
TYR D:242 G:231 83.0 0.361 H -89.5 -2.1 NA NA NA
TYR E:242 M:231 87.0 0.378 T -94.6 -0.5 NA NA NA
TYR F:242 N:231 82.0 0.357 H -89.0 -4.0 NA NA NA
TYR G:242 S:231 82.0 0.357 H -83.8 -1.2 NA NA NA
TYR H:242 T:231 84.0 0.365 H -87.2 -6.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 TYR A:233 A:231 78.0 0.339 T -84.6 15.2 78.0 0.339 0.0
TYR B:233 C:231 79.0 0.343 T -83.1 21.9 79.0 0.343 0.0 HOH
 8.393
 CE1
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 TYR A:231 A:231 75.0 0.326 T -81.4 3.3 75.0 0.326 0.0 HOH
 2.703
 OH
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 TYR A:231 A:231 77.0 0.335 H -80.3 -6.6 77.0 0.335 0.0 HOH
 2.645
 OH
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 TYR A:226 A:231 65.0 0.283 H -94.3 1.7 65.0 0.283 0.0 HOH
 2.733
 OH
 O
TYR B:226 B:231 67.0 0.291 H -91.6 0.9 67.0 0.291 0.0 HOH
 1.813
 HH
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 TYR A:226 A:231 68.0 0.296 H -94.2 3.5 68.0 0.296 0.0 HOH
 2.708
 OH
 O
TYR B:226 B:231 68.0 0.296 H -90.8 4.8 68.0 0.296 0.0 HOH
 2.728
 OH
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 TYR A:231 A:231 71.0 0.309 T -94.7 0.6 71.0 0.309 0.0 BTB
HOH
 6.560
2.808
 OH
OH
 C4
O
TYR B:231 B:231 78.0 0.339 T -94.2 1.4 78.0 0.339 0.0 BTB
GOL
HOH
 6.751
8.495
2.699
 CE2
O
OH
 C8
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 TYR A:231 A:231 79.0 0.343 H -83.2 -19.4