Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241814542 . C A CCDS2543.1:NM_000030.2:c.697Cgc>Agc_NP_000021.1:p.233R>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:233 A:233 14.0 0.062 -93.9 159.2 14.0 0.062 0.0 HOH
 2.646
 NH2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:233 A:233 17.0 0.076 -63.1 148.6 17.0 0.076 0.0 HOH
 6.589
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:233 A:233 29.0 0.129 -72.0 147.0 29.0 0.129 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:233 A:233 33.0 0.147 -76.5 143.5 33.0 0.147 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:235 A:233 18.0 0.08 -56.7 133.9 18.0 0.08 0.0 HOH
 3.156
 NH2
 O
ARG C:235 C:233 28.0 0.124 -75.4 152.0 28.0 0.124 0.0 HOH
 2.833
 NH2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:233 A:233 23.0 0.102 -43.1 148.0 23.0 0.102 0.0 HOH
 4.222
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:235 A:233 29.0 0.129 -69.5 154.0 29.0 0.129 0.0 BTB
HOH
 9.819
3.209
 CG
NH2
 O6
O
ARG B:235 C:233 14.0 0.062 -69.2 153.5 14.0 0.062 0.0 HOH
 2.817
 NH2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:235 A:233 22.0 0.098 -49.3 144.9 22.0 0.098 0.0
ARG B:235 B:233 22.0 0.098 -48.4 145.4 22.0 0.098 0.0
ARG C:235 C:233 21.0 0.093 -49.8 145.3 NA NA NA
ARG D:235 D:233 28.0 0.124 -49.1 144.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:233 A:233 22.0 0.098 -51.6 138.7 22.0 0.098 0.0 HOH
 3.036
 NH2
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:244 A:233 22.0 0.098 -24.0 133.6 22.0 0.098 0.0 HOH
 2.876
 O
 O
ARG B:244 B:233 23.0 0.102 -61.3 147.5 23.0 0.102 0.0 HOH
 3.136
 O
 O
ARG C:244 E:233 22.0 0.098 -61.0 147.0 NA NA NA
ARG D:244 G:233 20.0 0.089 -62.4 148.0 NA NA NA
ARG E:244 M:233 21.0 0.093 -61.0 143.3 NA NA NA
ARG F:244 N:233 25.0 0.111 -67.2 147.1 NA NA NA
ARG G:244 S:233 21.0 0.093 -61.7 144.0 NA NA NA
ARG H:244 T:233 23.0 0.102 -66.9 147.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:235 A:233 27.0 0.12 -74.6 161.2 27.0 0.12 0.0
ARG B:235 C:233 30.0 0.133 -64.0 155.8 30.0 0.133 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:233 A:233 31.0 0.138 -73.6 145.8 31.0 0.138 0.0 HOH
 7.394
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:233 A:233 23.0 0.102 -67.7 152.4 23.0 0.102 0.0 HOH
 3.126
 NH2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:228 A:233 31.0 0.138 -69.0 151.9 31.0 0.138 0.0 HOH
 2.019
 HH22
 O
ARG B:228 B:233 21.0 0.093 -68.2 152.7 21.0 0.093 0.0 HOH
 2.336
 HG3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:228 A:233 30.0 0.133 -69.9 152.4 30.0 0.133 0.0 HOH
 1.862
 HH22
 O
ARG B:228 B:233 21.0 0.093 -75.5 153.4 21.0 0.093 0.0 HOH
 2.403
 HG3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:233 A:233 20.0 0.089 -67.8 139.8 20.0 0.089 0.0 HOH
 3.094
 NH2
 O
ARG B:233 B:233 34.0 0.151 -68.5 148.7 34.0 0.151 0.0 GOL
HOH
 8.268
3.014
 O
N
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:233 A:233 25.0 0.111 -52.0 150.5