Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241814543 | . | G | A | CCDS2543.1:NM_000030.2:c.698cGc>cAc_NP_000021.1:p.233R>H | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | ARG | A:233 | A:233 | 14.0 | 0.062 | -93.9 | 159.2 | 14.0 | 0.062 | 0.0 |
HOH |
2.646 |
NH2 |
O |
|||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:233 | A:233 | 17.0 | 0.076 | -63.1 | 148.6 | 17.0 | 0.076 | 0.0 |
HOH |
6.589 |
O |
O |
|||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:233 | A:233 | 29.0 | 0.129 | -72.0 | 147.0 | 29.0 | 0.129 | 0.0 | |||||||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:233 | A:233 | 33.0 | 0.147 | -76.5 | 143.5 | 33.0 | 0.147 | 0.0 | |||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | ARG | A:235 | A:233 | 18.0 | 0.08 | -56.7 | 133.9 | 18.0 | 0.08 | 0.0 |
HOH |
3.156 |
NH2 |
O |
|||
ARG | C:235 | C:233 | 28.0 | 0.124 | -75.4 | 152.0 | 28.0 | 0.124 | 0.0 |
HOH |
2.833 |
NH2 |
O |
||||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:233 | A:233 | 23.0 | 0.102 | -43.1 | 148.0 | 23.0 | 0.102 | 0.0 |
HOH |
4.222 |
O |
O |
|||
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:235 | A:233 | 29.0 | 0.129 | -69.5 | 154.0 | 29.0 | 0.129 | 0.0 |
BTB HOH |
9.819 3.209 |
CG NH2 |
O6 O |
|||
ARG | B:235 | C:233 | 14.0 | 0.062 | -69.2 | 153.5 | 14.0 | 0.062 | 0.0 |
HOH |
2.817 |
NH2 |
O |
||||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | ARG | A:235 | A:233 | 22.0 | 0.098 | -49.3 | 144.9 | 22.0 | 0.098 | 0.0 | |||||||
ARG | B:235 | B:233 | 22.0 | 0.098 | -48.4 | 145.4 | 22.0 | 0.098 | 0.0 | ||||||||||||||
ARG | C:235 | C:233 | 21.0 | 0.093 | -49.8 | 145.3 | NA | NA | NA | ||||||||||||||
ARG | D:235 | D:233 | 28.0 | 0.124 | -49.1 | 144.6 | NA | NA | NA | ||||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | ARG | A:233 | A:233 | 22.0 | 0.098 | -51.6 | 138.7 | 22.0 | 0.098 | 0.0 |
HOH |
3.036 |
NH2 |
O |
|||
5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | ARG | A:244 | A:233 | 22.0 | 0.098 | -24.0 | 133.6 | 22.0 | 0.098 | 0.0 |
HOH |
2.876 |
O |
O |
|||
ARG | B:244 | B:233 | 23.0 | 0.102 | -61.3 | 147.5 | 23.0 | 0.102 | 0.0 |
HOH |
3.136 |
O |
O |
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ARG | C:244 | E:233 | 22.0 | 0.098 | -61.0 | 147.0 | NA | NA | NA | ||||||||||||||
ARG | D:244 | G:233 | 20.0 | 0.089 | -62.4 | 148.0 | NA | NA | NA | ||||||||||||||
ARG | E:244 | M:233 | 21.0 | 0.093 | -61.0 | 143.3 | NA | NA | NA | ||||||||||||||
ARG | F:244 | N:233 | 25.0 | 0.111 | -67.2 | 147.1 | NA | NA | NA | ||||||||||||||
ARG | G:244 | S:233 | 21.0 | 0.093 | -61.7 | 144.0 | NA | NA | NA | ||||||||||||||
ARG | H:244 | T:233 | 23.0 | 0.102 | -66.9 | 147.9 | NA | NA | NA | ||||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:235 | A:233 | 27.0 | 0.12 | -74.6 | 161.2 | 27.0 | 0.12 | 0.0 | |||||||
ARG | B:235 | C:233 | 30.0 | 0.133 | -64.0 | 155.8 | 30.0 | 0.133 | 0.0 | ||||||||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:233 | A:233 | 31.0 | 0.138 | -73.6 | 145.8 | 31.0 | 0.138 | 0.0 |
HOH |
7.394 |
N |
O |
|||
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:233 | A:233 | 23.0 | 0.102 | -67.7 | 152.4 | 23.0 | 0.102 | 0.0 |
HOH |
3.126 |
NH2 |
O |
|||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | ARG | A:228 | A:233 | 31.0 | 0.138 | -69.0 | 151.9 | 31.0 | 0.138 | 0.0 |
HOH |
2.019 |
HH22 |
O |
|||
ARG | B:228 | B:233 | 21.0 | 0.093 | -68.2 | 152.7 | 21.0 | 0.093 | 0.0 |
HOH |
2.336 |
HG3 |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:228 | A:233 | 30.0 | 0.133 | -69.9 | 152.4 | 30.0 | 0.133 | 0.0 |
HOH |
1.862 |
HH22 |
O |
|||
ARG | B:228 | B:233 | 21.0 | 0.093 | -75.5 | 153.4 | 21.0 | 0.093 | 0.0 |
HOH |
2.403 |
HG3 |
O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | ARG | A:233 | A:233 | 20.0 | 0.089 | -67.8 | 139.8 | 20.0 | 0.089 | 0.0 |
HOH |
3.094 |
NH2 |
O |
|||
ARG | B:233 | B:233 | 34.0 | 0.151 | -68.5 | 148.7 | 34.0 | 0.151 | 0.0 |
GOL HOH |
8.268 3.014 |
O N |
O1 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | ARG | A:233 | A:233 | 25.0 | 0.111 | -52.0 | 150.5 |