Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241814546 . A C CCDS2543.1:NM_000030.2:c.701aAg>aCg_NP_000021.1:p.234K>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:234 A:234 201.0 1.0 S -95.9 -22.8 201.0 1.0 0.0 HOH
 7.647
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:234 A:234 101.0 NA S -95.9 -20.9 101.0 NA NA HOH
 8.777
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:234 A:234 97.0 NA S -69.3 -53.7 97.0 NA NA
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:234 A:234 98.0 NA S -59.6 -57.5 98.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:236 A:234 151.0 NA S -82.0 -8.4 151.0 NA NA HOH
 6.066
 C
 O
LYS C:236 C:234 98.0 NA S -82.0 -25.0 98.0 NA NA HOH
 5.304
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:234 A:234 194.0 0.97 S -110.1 -23.0 194.0 0.97 0.0 HOH
 2.696
 CD
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:236 A:234 145.0 NA S -82.4 -24.0 145.0 NA NA HOH
 5.506
 CB
 O
LYS B:236 C:234 195.0 0.975 S -91.5 -50.6 195.0 0.975 0.0 HOH
 2.979
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:236 A:234 151.0 NA S -85.7 -19.9 151.0 NA NA
LYS B:236 B:234 152.0 NA S -88.2 -21.3 152.0 NA NA
LYS C:236 C:234 152.0 NA S -85.3 -20.1 NA NA NA
LYS D:236 D:234 126.0 NA S -87.6 -20.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:234 A:234 203.0 1.0 S -92.7 -20.9 203.0 1.0 0.0 HOH
 2.748
 NZ
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:245 A:234 190.0 0.95 S -95.9 -13.6 190.0 0.95 0.0 HOH
 3.206
 N
 O
LYS B:245 B:234 99.0 NA S -86.8 -12.4 99.0 NA NA HOH
 2.866
 N
 O
LYS C:245 E:234 125.0 NA S -91.2 -11.5 NA NA NA
LYS D:245 G:234 124.0 NA S -90.7 -13.8 NA NA NA
LYS E:245 M:234 115.0 NA S -94.1 -6.0 NA NA NA
LYS F:245 N:234 100.0 NA S -92.2 -14.0 NA NA NA
LYS G:245 S:234 146.0 NA S -91.0 -7.4 NA NA NA
LYS H:245 T:234 123.0 NA S -93.3 -13.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:236 A:234 149.0 NA S -98.6 -20.5 149.0 NA NA
LYS B:236 C:234 149.0 NA S -95.2 -33.0 149.0 NA NA
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:234 A:234 198.0 0.99 S -76.2 -45.2 198.0 0.99 0.0 HOH
 9.646
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:234 A:234 196.0 0.98 S -82.9 -36.4 196.0 0.98 0.0 HOH
 5.142
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:229 A:234 172.0 0.86 S -85.4 -14.8 172.0 0.86 0.0 HOH
 3.585
 HB3
 O
LYS B:229 B:234 194.0 0.97 S -104.1 6.4 194.0 0.97 0.0 HOH
 2.699
 HZ2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:229 A:234 185.0 0.925 S -88.3 -9.9 185.0 0.925 0.0 HOH
 3.614
 HB2
 O
LYS B:229 B:234 201.0 1.0 S -104.1 9.9 201.0 1.0 0.0 HOH
 1.927
 HZ2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:234 A:234 201.0 1.0 S -81.8 -9.1 201.0 1.0 0.0 HOH
 2.964
 N
 O
LYS B:234 B:234 188.0 0.94 S -83.1 -9.2 188.0 0.94 0.0 GOL
HOH
 9.281
2.858
 C
NZ
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:234 A:234 192.0 0.96 S -87.1 -22.2