Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241814551 . A C CCDS2543.1:NM_000030.2:c.706Aag>Cag_NP_000021.1:p.236K>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:236 A:236 170.0 0.85 -91.2 135.4 106.0 0.53 0.32 A:P21549:0.32
 GOL
HOH
 5.975
4.200
 NZ
O
 O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:236 A:236 180.0 0.9 -77.2 135.9 98.0 0.49 0.41 A:P21549:0.41
 HOH
 7.781
 NZ
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:236 A:236 179.0 0.895 -88.5 146.9 110.0 0.55 0.345 A:P21549:0.345
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:236 A:236 106.0 NA -79.1 139.0 73.0 NA NA A:P21549:NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:238 A:236 188.0 0.94 -76.4 143.1 122.0 0.61 0.33 C:P21549:0.33
 HOH
 2.734
 O
 O
LYS C:238 C:236 184.0 0.92 -76.0 144.5 119.0 0.595 0.325 A:P21549:0.325
 BTB
HOH
 8.075
2.796
 CE
O
 O3
O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:236 A:236 186.0 0.93 -82.5 140.8 122.0 0.61 0.32 A:P21549:0.32
 HOH
 6.774
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:238 A:236 184.0 0.92 -67.8 144.7 120.0 0.6 0.32 B:P21549:0.32
 BTB
HOH
 7.112
2.910
 CE
NZ
 O6
O
LYS B:238 C:236 183.0 0.915 -80.5 145.9 111.0 0.555 0.36 A:P21549:0.36
 BTB
HOH
 7.645
2.614
 CE
O
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:238 A:236 186.0 0.93 -85.6 141.8 122.0 0.61 0.32 B:P21549:0.32
LYS B:238 B:236 187.0 0.935 -87.0 142.9 129.0 0.645 0.29 A:P21549:0.29
 GOL
 8.565
 NZ
 O1
LYS C:238 C:236 187.0 0.935 -85.6 143.6 NA NA NA
LYS D:238 D:236 188.0 0.94 -84.8 141.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:236 A:236 187.0 0.935 -81.8 129.0 187.0 0.935 0.0 HOH
 2.518
 NZ
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:247 A:236 186.0 0.93 -76.5 144.1 120.0 0.6 0.33 B:P21549:0.33
 BTB
HOH
 7.731
2.699
 NZ
O
 O8
O
LYS B:247 B:236 186.0 0.93 -78.8 145.6 116.0 0.58 0.35 A:P21549:0.35
 BTB
HOH
 8.014
2.732
 NZ
N
 C8
O
LYS C:247 E:236 188.0 0.94 -80.0 141.9 NA NA NA
LYS D:247 G:236 185.0 0.925 -77.8 142.1 NA NA NA
LYS E:247 M:236 185.0 0.925 -75.1 143.3 NA NA NA
LYS F:247 N:236 192.0 0.96 -78.1 144.5 NA NA NA
LYS G:247 S:236 185.0 0.925 -82.3 142.7 NA NA NA
LYS H:247 T:236 188.0 0.94 -77.4 146.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:238 A:236 187.0 0.935 -68.1 153.5 127.0 0.635 0.3 B:P21549:0.3
LYS B:238 C:236 180.0 0.9 -72.1 150.3 112.0 0.56 0.34 A:P21549:0.34
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:236 A:236 176.0 0.88 -98.9 132.2 119.0 0.595 0.285 A:P21549:0.285
 HOH
 2.940
 NZ
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:236 A:236 184.0 0.92 -81.9 139.0 115.0 0.575 0.345 A:P21549:0.345
 HOH
 2.753
 NZ
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:231 A:236 180.0 0.9 -71.8 147.3 112.0 0.56 0.34 B:P21549:0.34
 HOH
 2.177
 HZ1
 O
LYS B:231 B:236 184.0 0.92 -76.8 144.6 111.0 0.555 0.365 A:P21549:0.365
 HOH
 1.954
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:231 A:236 180.0 0.9 -73.1 146.7 112.0 0.56 0.34 B:P21549:0.34
 HOH
 2.168
 HZ2
 O
LYS B:231 B:236 183.0 0.915 -74.5 145.0 110.0 0.55 0.365 A:P21549:0.365
 HOH
 1.969
 HZ2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:236 A:236 184.0 0.92 -74.5 146.4 118.0 0.59 0.33 B:P21549:0.33
 BTB
HOH
 5.553
2.770
 CE
O
 O8
O
LYS B:236 B:236 179.0 0.895 -69.3 148.0 113.0 0.565 0.33 A:P21549:0.33
 BTB
GOL
HOH
 6.621
3.457
2.720
 CE
NZ
O
 O8
C2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:236 A:236 184.0 0.92 -74.1 144.2