Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241815398 | . | A | C | CCDS2543.1:NM_000030.2:c.823Agc>Cgc_NP_000021.1:p.275S>R | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | SER | A:275 | A:275 | 1.0 | 0.009 | H | -80.0 | -26.1 | 1.0 | 0.009 | 0.0 |
GOL HOH |
7.684 2.703 |
O O |
C3 O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | SER | A:275 | A:275 | 2.0 | 0.017 | H | -62.8 | -36.6 | 2.0 | 0.017 | 0.0 |
HOH |
2.765 |
O |
O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | SER | A:275 | A:275 | 1.0 | 0.009 | H | -58.0 | -31.7 | 1.0 | 0.009 | 0.0 |
HOH |
8.546 |
CB |
O |
||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | SER | A:275 | A:275 | 3.0 | 0.026 | H | -47.3 | -37.8 | 3.0 | 0.026 | 0.0 | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | SER | A:277 | A:275 | 2.0 | 0.017 | H | -69.4 | -31.6 | 2.0 | 0.017 | 0.0 |
HOH |
2.697 |
O |
O |
||
SER | C:277 | C:275 | 1.0 | 0.009 | H | -73.9 | -27.8 | 1.0 | 0.009 | 0.0 |
HOH |
2.863 |
O |
O |
|||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | SER | A:275 | A:275 | 3.0 | 0.026 | H | -59.7 | -34.1 | 3.0 | 0.026 | 0.0 |
HOH |
7.737 |
OG |
O |
||
4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | SER | A:277 | A:275 | 3.0 | 0.026 | H | -65.4 | -32.7 | 3.0 | 0.026 | 0.0 |
HOH |
2.762 |
O |
O |
||
SER | B:277 | C:275 | 1.0 | 0.009 | H | -66.9 | -35.6 | 1.0 | 0.009 | 0.0 |
HOH |
2.643 |
O |
O |
|||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | SER | A:277 | A:275 | 4.0 | 0.035 | H | -79.9 | -36.6 | 4.0 | 0.035 | 0.0 | ||||||
SER | B:277 | B:275 | 4.0 | 0.035 | H | -81.0 | -36.5 | 4.0 | 0.035 | 0.0 | |||||||||||||
SER | C:277 | C:275 | 3.0 | 0.026 | H | -82.1 | -36.4 | NA | NA | NA | |||||||||||||
SER | D:277 | D:275 | 4.0 | 0.035 | H | -80.6 | -36.5 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | SER | A:275 | A:275 | 2.0 | 0.017 | H | -66.1 | -27.9 | 2.0 | 0.017 | 0.0 |
GOL HOH |
7.641 2.481 |
O O |
O3 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | SER | A:286 | A:275 | 3.0 | 0.026 | H | -61.9 | -36.8 | 3.0 | 0.026 | 0.0 |
HOH |
2.831 |
O |
O |
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SER | B:286 | B:275 | 3.0 | 0.026 | H | -62.5 | -37.9 | 3.0 | 0.026 | 0.0 |
HOH |
2.761 |
O |
O |
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SER | C:286 | E:275 | 2.0 | 0.017 | H | -62.7 | -37.9 | NA | NA | NA | |||||||||||||
SER | D:286 | G:275 | 2.0 | 0.017 | H | -62.6 | -37.5 | NA | NA | NA | |||||||||||||
SER | E:286 | M:275 | 2.0 | 0.017 | H | -66.6 | -37.4 | NA | NA | NA | |||||||||||||
SER | F:286 | N:275 | 2.0 | 0.017 | H | -65.7 | -37.3 | NA | NA | NA | |||||||||||||
SER | G:286 | S:275 | 2.0 | 0.017 | H | -60.5 | -38.7 | NA | NA | NA | |||||||||||||
SER | H:286 | T:275 | 2.0 | 0.017 | H | -64.5 | -38.3 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | SER | A:277 | A:275 | 2.0 | 0.017 | H | -79.8 | -29.5 | 2.0 | 0.017 | 0.0 | ||||||
SER | B:277 | C:275 | 2.0 | 0.017 | H | -72.2 | -33.2 | 2.0 | 0.017 | 0.0 |
HOH |
9.143 |
CA |
O |
|||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | SER | A:275 | A:275 | 2.0 | 0.017 | H | -68.2 | -28.8 | 2.0 | 0.017 | 0.0 |
HOH |
2.766 |
O |
O |
||
4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | SER | A:275 | A:275 | 2.0 | 0.017 | H | -65.5 | -34.4 | 2.0 | 0.017 | 0.0 |
HOH |
5.688 |
O |
O |
||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | SER | A:270 | A:275 | 2.0 | 0.017 | H | -65.7 | -36.0 | 2.0 | 0.017 | 0.0 |
HOH |
2.728 |
O |
O |
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SER | B:270 | B:275 | 1.0 | 0.009 | H | -65.0 | -35.3 | 1.0 | 0.009 | 0.0 |
HOH |
2.914 |
O |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | SER | A:270 | A:275 | 2.0 | 0.017 | H | -68.3 | -34.6 | 2.0 | 0.017 | 0.0 |
HOH |
2.843 |
O |
O |
||
SER | B:270 | B:275 | 1.0 | 0.009 | H | -66.9 | -38.8 | 1.0 | 0.009 | 0.0 |
HOH |
2.878 |
O |
O |
|||||||||
2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | SER | A:275 | A:275 | 2.0 | 0.017 | H | -66.0 | -35.9 | 2.0 | 0.017 | 0.0 |
HOH |
2.698 |
O |
O |
||
SER | B:275 | B:275 | 2.0 | 0.017 | H | -67.3 | -36.7 | 2.0 | 0.017 | 0.0 |
HOH |
2.740 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | SER | A:275 | A:275 | 3.0 | 0.026 | H | -63.6 | -40.9 |