Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241815399 . G A CCDS2543.1:NM_000030.2:c.824aGc>aAc_NP_000021.1:p.275S>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 SER A:275 A:275 1.0 0.009 H -80.0 -26.1 1.0 0.009 0.0 GOL
HOH
 7.684
2.703
 O
O
 C3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 SER A:275 A:275 2.0 0.017 H -62.8 -36.6 2.0 0.017 0.0 HOH
 2.765
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:275 A:275 1.0 0.009 H -58.0 -31.7 1.0 0.009 0.0 HOH
 8.546
 CB
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 SER A:275 A:275 3.0 0.026 H -47.3 -37.8 3.0 0.026 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 SER A:277 A:275 2.0 0.017 H -69.4 -31.6 2.0 0.017 0.0 HOH
 2.697
 O
 O
SER C:277 C:275 1.0 0.009 H -73.9 -27.8 1.0 0.009 0.0 HOH
 2.863
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 SER A:275 A:275 3.0 0.026 H -59.7 -34.1 3.0 0.026 0.0 HOH
 7.737
 OG
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 SER A:277 A:275 3.0 0.026 H -65.4 -32.7 3.0 0.026 0.0 HOH
 2.762
 O
 O
SER B:277 C:275 1.0 0.009 H -66.9 -35.6 1.0 0.009 0.0 HOH
 2.643
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 SER A:277 A:275 4.0 0.035 H -79.9 -36.6 4.0 0.035 0.0
SER B:277 B:275 4.0 0.035 H -81.0 -36.5 4.0 0.035 0.0
SER C:277 C:275 3.0 0.026 H -82.1 -36.4 NA NA NA
SER D:277 D:275 4.0 0.035 H -80.6 -36.5 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 SER A:275 A:275 2.0 0.017 H -66.1 -27.9 2.0 0.017 0.0 GOL
HOH
 7.641
2.481
 O
O
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 SER A:286 A:275 3.0 0.026 H -61.9 -36.8 3.0 0.026 0.0 HOH
 2.831
 O
 O
SER B:286 B:275 3.0 0.026 H -62.5 -37.9 3.0 0.026 0.0 HOH
 2.761
 O
 O
SER C:286 E:275 2.0 0.017 H -62.7 -37.9 NA NA NA
SER D:286 G:275 2.0 0.017 H -62.6 -37.5 NA NA NA
SER E:286 M:275 2.0 0.017 H -66.6 -37.4 NA NA NA
SER F:286 N:275 2.0 0.017 H -65.7 -37.3 NA NA NA
SER G:286 S:275 2.0 0.017 H -60.5 -38.7 NA NA NA
SER H:286 T:275 2.0 0.017 H -64.5 -38.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 SER A:277 A:275 2.0 0.017 H -79.8 -29.5 2.0 0.017 0.0
SER B:277 C:275 2.0 0.017 H -72.2 -33.2 2.0 0.017 0.0 HOH
 9.143
 CA
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 SER A:275 A:275 2.0 0.017 H -68.2 -28.8 2.0 0.017 0.0 HOH
 2.766
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 SER A:275 A:275 2.0 0.017 H -65.5 -34.4 2.0 0.017 0.0 HOH
 5.688
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 SER A:270 A:275 2.0 0.017 H -65.7 -36.0 2.0 0.017 0.0 HOH
 2.728
 O
 O
SER B:270 B:275 1.0 0.009 H -65.0 -35.3 1.0 0.009 0.0 HOH
 2.914
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 SER A:270 A:275 2.0 0.017 H -68.3 -34.6 2.0 0.017 0.0 HOH
 2.843
 O
 O
SER B:270 B:275 1.0 0.009 H -66.9 -38.8 1.0 0.009 0.0 HOH
 2.878
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 SER A:275 A:275 2.0 0.017 H -66.0 -35.9 2.0 0.017 0.0 HOH
 2.698
 O
 O
SER B:275 B:275 2.0 0.017 H -67.3 -36.7 2.0 0.017 0.0 HOH
 2.740
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 SER A:275 A:275 3.0 0.026 H -63.6 -40.9