Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241815411 . T A CCDS2543.1:NM_000030.2:c.836aTt>aAt_NP_000021.1:p.279I>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ILE A:279 A:279 9.0 0.051 H -74.0 -26.8 9.0 0.051 0.0 GOL
HOH
 6.941
3.992
 N
N
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ILE A:279 A:279 11.0 0.063 H -81.5 -23.8 11.0 0.063 0.0 HOH
 4.293
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:279 A:279 9.0 0.051 H -69.9 -23.7 9.0 0.051 0.0 HOH
 7.461
 CD1
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ILE A:279 A:279 11.0 0.063 H -73.4 -22.5 11.0 0.063 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ILE A:281 A:279 10.0 0.057 H -76.3 -26.8 10.0 0.057 0.0 HOH
 3.835
 CA
 O
ILE C:281 C:279 10.0 0.057 H -66.4 -29.5 10.0 0.057 0.0 HOH
 3.301
 CA
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ILE A:279 A:279 9.0 0.051 H -74.3 -29.5 9.0 0.051 0.0 HOH
 4.444
 CD1
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ILE A:281 A:279 9.0 0.051 H -78.2 -27.9 9.0 0.051 0.0 HOH
 4.151
 CD1
 O
ILE B:281 C:279 11.0 0.063 H -77.4 -27.4 11.0 0.063 0.0 HOH
 3.939
 CD1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ILE A:281 A:279 6.0 0.034 H -71.4 -36.0 6.0 0.034 0.0
ILE B:281 B:279 5.0 0.029 H -70.5 -35.5 5.0 0.029 0.0
ILE C:281 C:279 4.0 0.023 H -69.7 -37.0 NA NA NA
ILE D:281 D:279 4.0 0.023 H -70.8 -34.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ILE A:279 A:279 13.0 0.074 H -67.5 -20.5 13.0 0.074 0.0 GOL
HOH
 7.062
3.459
 N
CB
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ILE A:290 A:279 11.0 0.063 H -76.3 -27.4 11.0 0.063 0.0 HOH
 3.530
 CA
 O
ILE B:290 B:279 12.0 0.069 H -75.4 -24.1 12.0 0.069 0.0 HOH
 3.398
 CA
 O
ILE C:290 E:279 10.0 0.057 H -79.1 -27.9 NA NA NA
ILE D:290 G:279 11.0 0.063 H -77.5 -25.6 NA NA NA
ILE E:290 M:279 12.0 0.069 H -74.7 -25.4 NA NA NA
ILE F:290 N:279 13.0 0.074 H -75.0 -28.7 NA NA NA
ILE G:290 S:279 11.0 0.063 H -74.3 -28.2 NA NA NA
ILE H:290 T:279 10.0 0.057 H -76.9 -21.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ILE A:281 A:279 14.0 0.08 H -80.7 -31.4 14.0 0.08 0.0 HOH
 6.394
 O
 O
ILE B:281 C:279 12.0 0.069 H -85.3 -24.5 12.0 0.069 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ILE A:279 A:279 11.0 0.063 H -75.9 -24.1 11.0 0.063 0.0 HOH
 3.863
 CA
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ILE A:279 A:279 11.0 0.063 H -80.1 -23.2 11.0 0.063 0.0 HOH
 3.834
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ILE A:274 A:279 9.0 0.051 H -75.5 -27.5 9.0 0.051 0.0 HOH
 2.490
 HA
 O
ILE B:274 B:279 9.0 0.051 H -74.6 -29.0 9.0 0.051 0.0 HOH
 2.451
 HA
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ILE A:274 A:279 9.0 0.051 H -76.0 -27.7 9.0 0.051 0.0 HOH
 2.479
 HA
 O
ILE B:274 B:279 10.0 0.057 H -74.8 -28.7 10.0 0.057 0.0 HOH
 2.376
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ILE A:279 A:279 10.0 0.057 H -77.6 -27.8 10.0 0.057 0.0 HOH
 3.667
 CD1
 O
ILE B:279 B:279 12.0 0.069 H -77.1 -29.7 12.0 0.069 0.0 HOH
 3.833
 CD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ILE A:279 A:279 10.0 0.057 H -72.3 -29.0