Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241815414 . C A CCDS2543.1:NM_000030.2:c.839gCg>gAg_NP_000021.1:p.280A>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:280 A:280 58.0 0.504 H -67.8 -33.8 5.0 0.043 0.461 A:P21549:0.461
 GOL
HOH
 9.307
3.002
 N
O
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:280 A:280 49.0 0.426 H -67.3 -47.2 3.0 0.026 0.4 A:P21549:0.4
 HOH
 6.291
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:280 A:280 49.0 0.426 H -59.8 -57.9 3.0 0.026 0.4 A:P21549:0.4
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:280 A:280 59.0 0.513 H -71.3 -36.3 7.0 0.061 0.452 A:P21549:0.452
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:282 A:280 54.0 0.47 H -66.4 -36.4 4.0 0.035 0.435 C:P21549:0.435
 HOH
 2.906
 O
 O
ALA C:282 C:280 53.0 0.461 H -70.2 -34.5 4.0 0.035 0.426 A:P21549:0.426
 HOH
 5.542
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:280 A:280 51.0 0.443 H -62.6 -43.9 3.0 0.026 0.417 A:P21549:0.417
 HOH
 8.983
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:282 A:280 55.0 0.478 H -65.9 -42.8 4.0 0.035 0.443 B:P21549:0.443
 HOH
 2.779
 O
 O
ALA B:282 C:280 55.0 0.478 H -65.7 -41.9 4.0 0.035 0.443 A:P21549:0.443
 HOH
 4.809
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:282 A:280 59.0 0.513 H -58.1 -34.3 4.0 0.035 0.478 B:P21549:0.478
ALA B:282 B:280 58.0 0.504 H -59.0 -33.3 5.0 0.043 0.461 A:P21549:0.461
ALA C:282 C:280 58.0 0.504 H -58.7 -32.9 NA NA NA
ALA D:282 D:280 59.0 0.513 H -59.1 -33.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:280 A:280 51.0 0.443 H -74.9 -36.1 51.0 0.443 0.0 GOL
HOH
 9.480
3.927
 N
O
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:291 A:280 56.0 0.487 H -62.9 -37.7 3.0 0.026 0.461 B:P21549:0.461
 HOH
 4.763
 O
 O
ALA B:291 B:280 55.0 0.478 H -63.7 -40.3 4.0 0.035 0.443 A:P21549:0.443
 HOH
 4.750
 O
 O
ALA C:291 E:280 56.0 0.487 H -61.1 -37.2 NA NA NA
ALA D:291 G:280 56.0 0.487 H -61.4 -36.8 NA NA NA
ALA E:291 M:280 57.0 0.496 H -64.4 -37.7 NA NA NA
ALA F:291 N:280 55.0 0.478 H -64.7 -37.2 NA NA NA
ALA G:291 S:280 54.0 0.47 H -65.3 -40.2 NA NA NA
ALA H:291 T:280 56.0 0.487 H -67.5 -39.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:282 A:280 53.0 0.461 H -65.1 -44.3 4.0 0.035 0.426 B:P21549:0.426
 HOH
 6.724
 O
 O
ALA B:282 C:280 53.0 0.461 H -71.2 -33.6 5.0 0.043 0.418 A:P21549:0.417
 HOH
 9.161
 CB
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:280 A:280 52.0 0.452 H -71.2 -36.3 5.0 0.043 0.409 A:P21549:0.409
 HOH
 5.649
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:280 A:280 55.0 0.478 H -64.5 -38.5 4.0 0.035 0.443 A:P21549:0.443
 HOH
 3.129
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:275 A:280 54.0 0.47 H -63.8 -39.0 4.0 0.035 0.435 B:P21549:0.435
 HOH
 2.935
 O
 O
ALA B:275 B:280 54.0 0.47 H -64.6 -35.4 4.0 0.035 0.435 A:P21549:0.435
 HOH
 2.667
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:275 A:280 55.0 0.478 H -65.7 -35.9 4.0 0.035 0.443 B:P21549:0.443
 HOH
 2.871
 O
 O
ALA B:275 B:280 53.0 0.461 H -66.4 -32.8 4.0 0.035 0.426 A:P21549:0.426
 HOH
 2.575
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:280 A:280 57.0 0.496 H -66.3 -33.0 4.0 0.035 0.461 B:P21549:0.461
 HOH
 2.752
 O
 O
ALA B:280 B:280 58.0 0.504 H -64.4 -36.5 5.0 0.043 0.461 A:P21549:0.461
 HOH
 2.595
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:280 A:280 52.0 0.452 H -68.4 -41.4