Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241815419 . C A CCDS2543.1:NM_000030.2:c.844Cag>Aag_NP_000021.1:p.282Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:282 A:282 66.0 0.367 H -74.2 -46.3 66.0 0.367 0.0 GOL
GOL
HOH
 7.591
5.671
3.197
 NE2
OE1
OE1
 O2
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:282 A:282 75.0 0.417 H -65.3 -42.4 75.0 0.417 0.0 HOH
 3.471
 CB
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:282 A:282 72.0 0.4 H -58.8 -58.8 72.0 0.4 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:282 A:282 74.0 0.411 H -60.4 -61.5 74.0 0.411 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:284 A:282 71.0 0.394 H -65.0 -48.1 71.0 0.394 0.0 HOH
 2.535
 OE1
 O
GLN C:284 C:282 75.0 0.417 H -66.2 -42.1 75.0 0.417 0.0 HOH
 2.730
 NE2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:282 A:282 63.0 0.35 H -66.7 -38.4 63.0 0.35 0.0 HOH
 4.126
 OE1
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:284 A:282 74.0 0.411 H -65.6 -41.6 74.0 0.411 0.0 HOH
 2.911
 OE1
 O
GLN B:284 C:282 69.0 0.383 H -61.2 -44.3 69.0 0.383 0.0 HOH
 2.927
 NE2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:284 A:282 73.0 0.406 H -62.4 -42.6 73.0 0.406 0.0
GLN B:284 B:282 73.0 0.406 H -62.7 -41.7 73.0 0.406 0.0
GLN C:284 C:282 72.0 0.4 H -61.5 -42.4 NA NA NA
GLN D:284 D:282 73.0 0.406 H -62.9 -42.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:282 A:282 80.0 0.444 H -58.1 -71.3 80.0 0.444 0.0 GOL
GOL
HOH
 7.641
6.760
2.814
 NE2
CG
O
 O2
C3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:293 A:282 70.0 0.389 H -66.2 -42.7 70.0 0.389 0.0 HOH
 2.667
 OE1
 O
GLN B:293 B:282 67.0 0.372 H -64.1 -44.7 67.0 0.372 0.0 HOH
 2.731
 OE1
 O
GLN C:293 E:282 70.0 0.389 H -64.3 -42.9 NA NA NA
GLN D:293 G:282 71.0 0.394 H -65.2 -40.1 NA NA NA
GLN E:293 M:282 68.0 0.378 H -62.9 -45.0 NA NA NA
GLN F:293 N:282 72.0 0.4 H -66.5 -42.3 NA NA NA
GLN G:293 S:282 71.0 0.394 H -72.0 -40.6 NA NA NA
GLN H:293 T:282 70.0 0.389 H -66.5 -44.5 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:284 A:282 75.0 0.417 H -74.2 -41.5 75.0 0.417 0.0 HOH
 4.092
 O
 O
GLN B:284 C:282 72.0 0.4 H -63.7 -40.6 72.0 0.4 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:282 A:282 72.0 0.4 H -58.7 -67.4 72.0 0.4 0.0 HOH
 2.774
 OE1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLN A:282 A:282 66.0 0.367 H -67.1 -56.8 66.0 0.367 0.0 HOH
 2.365
 OE1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:277 A:282 69.0 0.383 H -69.8 -38.2 69.0 0.383 0.0 HOH
 2.204
 HE21
 O
GLN B:277 B:282 71.0 0.394 H -61.5 -45.3 71.0 0.394 0.0 HOH
 2.262
 HE21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:277 A:282 70.0 0.389 H -68.5 -39.5 70.0 0.389 0.0 HOH
 2.123
 HE21
 O
GLN B:277 B:282 75.0 0.417 H -63.5 -45.4 75.0 0.417 0.0 HOH
 2.321
 HE21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:282 A:282 73.0 0.406 H -68.2 -49.6 73.0 0.406 0.0 HOH
 2.854
 O
 O
GLN B:282 B:282 72.0 0.4 H -69.2 -45.2 72.0 0.4 0.0 HOH
 2.659
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:282 A:282 67.0 0.372 H -67.1 -41.0