Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241815421 | . | G | A | CCDS2543.1:NM_000030.2:c.846caG>caA_NP_000021.1:p.282Q>Q | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | GLN | A:282 | A:282 | 66.0 | 0.367 | H | -74.2 | -46.3 | 66.0 | 0.367 | 0.0 |
GOL GOL HOH |
7.591 5.671 3.197 |
NE2 OE1 OE1 |
O2 O3 O |
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5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | GLN | A:282 | A:282 | 75.0 | 0.417 | H | -65.3 | -42.4 | 75.0 | 0.417 | 0.0 |
HOH |
3.471 |
CB |
O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLN | A:282 | A:282 | 72.0 | 0.4 | H | -58.8 | -58.8 | 72.0 | 0.4 | 0.0 | ||||||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | GLN | A:282 | A:282 | 74.0 | 0.411 | H | -60.4 | -61.5 | 74.0 | 0.411 | 0.0 | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | GLN | A:284 | A:282 | 71.0 | 0.394 | H | -65.0 | -48.1 | 71.0 | 0.394 | 0.0 |
HOH |
2.535 |
OE1 |
O |
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GLN | C:284 | C:282 | 75.0 | 0.417 | H | -66.2 | -42.1 | 75.0 | 0.417 | 0.0 |
HOH |
2.730 |
NE2 |
O |
|||||||||
5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | GLN | A:282 | A:282 | 63.0 | 0.35 | H | -66.7 | -38.4 | 63.0 | 0.35 | 0.0 |
HOH |
4.126 |
OE1 |
O |
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4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | GLN | A:284 | A:282 | 74.0 | 0.411 | H | -65.6 | -41.6 | 74.0 | 0.411 | 0.0 |
HOH |
2.911 |
OE1 |
O |
||
GLN | B:284 | C:282 | 69.0 | 0.383 | H | -61.2 | -44.3 | 69.0 | 0.383 | 0.0 |
HOH |
2.927 |
NE2 |
O |
|||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | GLN | A:284 | A:282 | 73.0 | 0.406 | H | -62.4 | -42.6 | 73.0 | 0.406 | 0.0 | ||||||
GLN | B:284 | B:282 | 73.0 | 0.406 | H | -62.7 | -41.7 | 73.0 | 0.406 | 0.0 | |||||||||||||
GLN | C:284 | C:282 | 72.0 | 0.4 | H | -61.5 | -42.4 | NA | NA | NA | |||||||||||||
GLN | D:284 | D:282 | 73.0 | 0.406 | H | -62.9 | -42.2 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | GLN | A:282 | A:282 | 80.0 | 0.444 | H | -58.1 | -71.3 | 80.0 | 0.444 | 0.0 |
GOL GOL HOH |
7.641 6.760 2.814 |
NE2 CG O |
O2 C3 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | GLN | A:293 | A:282 | 70.0 | 0.389 | H | -66.2 | -42.7 | 70.0 | 0.389 | 0.0 |
HOH |
2.667 |
OE1 |
O |
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GLN | B:293 | B:282 | 67.0 | 0.372 | H | -64.1 | -44.7 | 67.0 | 0.372 | 0.0 |
HOH |
2.731 |
OE1 |
O |
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GLN | C:293 | E:282 | 70.0 | 0.389 | H | -64.3 | -42.9 | NA | NA | NA | |||||||||||||
GLN | D:293 | G:282 | 71.0 | 0.394 | H | -65.2 | -40.1 | NA | NA | NA | |||||||||||||
GLN | E:293 | M:282 | 68.0 | 0.378 | H | -62.9 | -45.0 | NA | NA | NA | |||||||||||||
GLN | F:293 | N:282 | 72.0 | 0.4 | H | -66.5 | -42.3 | NA | NA | NA | |||||||||||||
GLN | G:293 | S:282 | 71.0 | 0.394 | H | -72.0 | -40.6 | NA | NA | NA | |||||||||||||
GLN | H:293 | T:282 | 70.0 | 0.389 | H | -66.5 | -44.5 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | GLN | A:284 | A:282 | 75.0 | 0.417 | H | -74.2 | -41.5 | 75.0 | 0.417 | 0.0 |
HOH |
4.092 |
O |
O |
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GLN | B:284 | C:282 | 72.0 | 0.4 | H | -63.7 | -40.6 | 72.0 | 0.4 | 0.0 | |||||||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | GLN | A:282 | A:282 | 72.0 | 0.4 | H | -58.7 | -67.4 | 72.0 | 0.4 | 0.0 |
HOH |
2.774 |
OE1 |
O |
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4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | GLN | A:282 | A:282 | 66.0 | 0.367 | H | -67.1 | -56.8 | 66.0 | 0.367 | 0.0 |
HOH |
2.365 |
OE1 |
O |
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5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | GLN | A:277 | A:282 | 69.0 | 0.383 | H | -69.8 | -38.2 | 69.0 | 0.383 | 0.0 |
HOH |
2.204 |
HE21 |
O |
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GLN | B:277 | B:282 | 71.0 | 0.394 | H | -61.5 | -45.3 | 71.0 | 0.394 | 0.0 |
HOH |
2.262 |
HE21 |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | GLN | A:277 | A:282 | 70.0 | 0.389 | H | -68.5 | -39.5 | 70.0 | 0.389 | 0.0 |
HOH |
2.123 |
HE21 |
O |
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GLN | B:277 | B:282 | 75.0 | 0.417 | H | -63.5 | -45.4 | 75.0 | 0.417 | 0.0 |
HOH |
2.321 |
HE21 |
O |
|||||||||
2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | GLN | A:282 | A:282 | 73.0 | 0.406 | H | -68.2 | -49.6 | 73.0 | 0.406 | 0.0 |
HOH |
2.854 |
O |
O |
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GLN | B:282 | B:282 | 72.0 | 0.4 | H | -69.2 | -45.2 | 72.0 | 0.4 | 0.0 |
HOH |
2.659 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | GLN | A:282 | A:282 | 67.0 | 0.372 | H | -67.1 | -41.0 |