Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241816958 . T A CCDS2543.1:NM_000030.2:c.851cTg>cAg_NP_000021.1:p.284L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:284 A:284 7.0 0.041 H -52.0 -42.5 2.0 0.012 0.029 A:P21549:0.029
 HOH
 3.435
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:284 A:284 9.0 0.053 H -51.3 -57.0 1.0 0.006 0.047 A:P21549:0.047
 HOH
 4.072
 CD2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:284 A:284 8.0 0.047 H -60.8 -41.1 2.0 0.012 0.035 A:P21549:0.035
 HOH
 4.258
 CD2
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:284 A:284 11.0 NA H -54.8 -52.9 11.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:286 A:284 9.0 0.053 H -49.5 -50.4 1.0 0.006 0.047 C:P21549:0.047
 HOH
 3.324
 N
 O
LEU C:286 C:284 8.0 0.047 H -54.4 -49.2 1.0 0.006 0.041 A:P21549:0.041
 HOH
 3.494
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:284 A:284 8.0 0.047 H -61.6 -38.4 1.0 0.006 0.041 A:P21549:0.041
 HOH
 4.221
 CD2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:286 A:284 5.0 0.029 H -59.9 -49.7 1.0 0.006 0.023 B:P21549:0.024
 HOH
 3.262
 N
 O
LEU B:286 C:284 8.0 0.047 H -55.3 -52.5 1.0 0.006 0.041 A:P21549:0.041
 HOH
 3.437
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:286 A:284 10.0 0.059 H -53.9 -52.6 3.0 0.018 0.041 B:P21549:0.041
LEU B:286 B:284 10.0 0.059 H -54.0 -52.4 2.0 0.012 0.047 A:P21549:0.047
LEU C:286 C:284 11.0 0.065 H -52.6 -51.9 NA NA NA
LEU D:286 D:284 9.0 0.053 H -53.6 -51.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:284 A:284 11.0 0.065 H -52.7 -40.9 11.0 0.065 0.0 HOH
 3.080
 CD1
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:295 A:284 6.0 0.035 H -53.0 -52.5 1.0 0.006 0.029 B:P21549:0.029
 HOH
 3.547
 N
 O
LEU B:295 B:284 7.0 0.041 H -59.7 -48.4 1.0 0.006 0.035 A:P21549:0.035
 HOH
 3.485
 N
 O
LEU C:295 E:284 7.0 0.041 H -56.8 -49.3 NA NA NA
LEU D:295 G:284 7.0 0.041 H -58.2 -50.6 NA NA NA
LEU E:295 M:284 6.0 0.035 H -55.8 -49.1 NA NA NA
LEU F:295 N:284 7.0 0.041 H -53.6 -50.5 NA NA NA
LEU G:295 S:284 8.0 0.047 H -59.9 -46.6 NA NA NA
LEU H:295 T:284 7.0 0.041 H -48.7 -51.2 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:286 A:284 5.0 0.029 H -50.2 -54.7 1.0 0.006 0.023 B:P21549:0.024
 HOH
 3.478
 N
 O
LEU B:286 C:284 4.0 0.024 H -45.2 -61.0 1.0 0.006 0.018 A:P21549:0.018
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:284 A:284 7.0 0.041 H -55.6 -40.8 1.0 0.006 0.035 A:P21549:0.035
 HOH
 3.296
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:284 A:284 9.0 0.053 H -58.7 -50.7 1.0 0.006 0.047 A:P21549:0.047
 HOH
 3.215
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:279 A:284 6.0 0.035 H -52.0 -53.2 2.0 0.012 0.023 B:P21549:0.024
 HOH
 3.187
 HD13
 O
LEU B:279 B:284 6.0 0.035 H -56.5 -51.4 1.0 0.006 0.029 A:P21549:0.029
 HOH
 3.193
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:279 A:284 6.0 0.035 H -48.8 -53.1 1.0 0.006 0.029 B:P21549:0.029
 HOH
 3.122
 HD13
 O
LEU B:279 B:284 7.0 0.041 H -52.9 -49.9 1.0 0.006 0.035 A:P21549:0.035
 HOH
 3.305
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:284 A:284 8.0 0.047 H -53.2 -49.6 1.0 0.006 0.041 B:P21549:0.041
 HOH
 3.473
 N
 O
LEU B:284 B:284 6.0 0.035 H -58.3 -50.6 1.0 0.006 0.029 A:P21549:0.029
 HOH
 3.618
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:284 A:284 8.0 0.047 H -53.7 -46.7