Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241816960 . G A CCDS2543.1:NM_000030.2:c.853Gag>Aag_NP_000021.1:p.285E>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLU A:285 A:285 152.0 0.8 H -61.4 -41.8 120.0 0.632 0.168 A:P21549:0.168
 GOL
HOH
 9.837
2.857
 O
O
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLU A:285 A:285 147.0 0.774 H -58.3 -38.1 105.0 0.553 0.221 A:P21549:0.221
 HOH
 6.867
 OE2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:285 A:285 143.0 0.753 H -80.4 -28.4 120.0 0.632 0.121 A:P21549:0.121
 HOH
 8.224
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLU A:285 A:285 66.0 NA H -59.3 -42.5 66.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLU A:287 A:285 144.0 0.758 H -67.2 -37.3 87.0 0.458 0.3 C:P21549:0.3
 HOH
 2.888
 N
 O
GLU C:287 C:285 146.0 0.768 H -66.1 -34.8 115.0 0.605 0.163 A:P21549:0.163
 HOH
 2.540
 OE2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLU A:285 A:285 146.0 0.768 H -77.1 -30.2 113.0 0.595 0.173 A:P21549:0.174
 HOH
 8.202
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLU A:287 A:285 123.0 0.647 H -64.3 -36.1 60.0 0.316 0.331 B:P21549:0.332
 HOH
 2.809
 OE2
 O
GLU B:287 C:285 142.0 0.747 H -65.1 -34.1 109.0 0.574 0.173 A:P21549:0.174
 HOH
 2.801
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLU A:287 A:285 86.0 NA H -56.1 -45.1 84.0 NA NA B:P21549:NA
GLU B:287 B:285 150.0 0.789 H -56.7 -43.8 135.0 0.711 0.078 A:P21549:0.079
GLU C:287 C:285 61.0 NA H -58.4 -43.0 NA NA NA
GLU D:287 D:285 146.0 0.768 H -56.7 -43.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLU A:285 A:285 145.0 0.763 H -72.0 -34.6 145.0 0.763 0.0 HOH
 2.755
 N
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLU A:296 A:285 150.0 0.789 H -61.0 -39.2 116.0 0.611 0.178 B:P21549:0.179
 HOH
 2.795
 O
 O
GLU B:296 B:285 143.0 0.753 H -65.8 -36.0 98.0 0.516 0.237 A:P21549:0.237
 HOH
 2.789
 OE1
 O
GLU C:296 E:285 149.0 0.784 H -62.7 -37.4 NA NA NA
GLU D:296 G:285 148.0 0.779 H -63.3 -37.5 NA NA NA
GLU E:296 M:285 141.0 0.742 H -62.9 -39.1 NA NA NA
GLU F:296 N:285 145.0 0.763 H -59.9 -42.7 NA NA NA
GLU G:296 S:285 152.0 0.8 H -62.4 -39.7 NA NA NA
GLU H:296 T:285 146.0 0.768 H -65.5 -35.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLU A:287 A:285 143.0 0.753 H -59.7 -45.6 105.0 0.553 0.2 B:P21549:0.2
 HOH
 2.951
 N
 O
GLU B:287 C:285 145.0 0.763 H -58.7 -40.9 113.0 0.595 0.168 A:P21549:0.168
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLU A:285 A:285 147.0 0.774 H -73.6 -47.5 93.0 0.489 0.285 A:P21549:0.284
 HOH
 2.890
 OE2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLU A:285 A:285 142.0 0.747 H -63.6 -41.7 76.0 0.4 0.347 A:P21549:0.347
 HOH
 3.524
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLU A:280 A:285 144.0 0.758 H -64.1 -35.6 109.0 0.574 0.184 B:P21549:0.184
 HOH
 2.221
 H
 O
GLU B:280 B:285 140.0 0.737 H -66.8 -37.2 108.0 0.568 0.169 A:P21549:0.168
 HOH
 2.132
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLU A:280 A:285 144.0 0.758 H -65.5 -34.4 110.0 0.579 0.179 B:P21549:0.179
 HOH
 2.222
 H
 O
GLU B:280 B:285 134.0 0.705 H -66.5 -37.7 102.0 0.537 0.168 A:P21549:0.168
 HOH
 2.196
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLU A:285 A:285 146.0 0.768 H -62.5 -41.6 113.0 0.595 0.173 B:P21549:0.174
 HOH
 2.911
 N
 O
GLU B:285 B:285 143.0 0.753 H -65.4 -38.8 72.0 0.379 0.374 A:P21549:0.374
 SO4
HOH
 8.785
2.684
 OE2
OE1
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLU A:285 A:285 145.0 0.763 H -64.5 -35.5