Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241816972 . C A CCDS2543.1:NM_000030.2:c.865Cgc>Agc_NP_000021.1:p.289R>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:289 A:289 141.0 0.627 H -71.0 -44.7 141.0 0.627 0.0 GOL
HOH
 4.728
2.542
 O
NH2
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:289 A:289 129.0 0.573 H -65.6 -53.8 129.0 0.573 0.0 HOH
 9.990
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:289 A:289 24.0 NA H -58.0 -61.4 24.0 NA NA
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:289 A:289 43.0 NA H -52.1 -63.2 43.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:291 A:289 135.0 0.6 H -60.2 -49.3 135.0 0.6 0.0 HOH
 3.089
 CD
 O
ARG C:291 C:289 137.0 0.609 H -73.6 -44.0 137.0 0.609 0.0 HOH
 3.766
 NE
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:289 A:289 105.0 0.467 H -60.0 -60.9 105.0 0.467 0.0 HOH
 8.003
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:291 A:289 102.0 0.453 H -67.4 -40.6 102.0 0.453 0.0 HOH
 3.530
 NE
 O
ARG B:291 C:289 114.0 0.507 H -69.9 -45.2 114.0 0.507 0.0 HOH
 3.926
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:291 A:289 86.0 NA H -54.0 -56.0 86.0 NA NA
ARG B:291 B:289 84.0 NA H -53.2 -55.4 84.0 NA NA
ARG C:291 C:289 66.0 NA H -53.7 -55.1 NA NA NA
ARG D:291 D:289 85.0 NA H -53.5 -55.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:289 A:289 127.0 0.564 H -64.4 -50.6 127.0 0.564 0.0 GOL
HOH
 5.674
6.599
 O
NH1
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:300 A:289 96.0 0.427 H -59.1 -44.2 96.0 0.427 0.0 HOH
 2.753
 NH2
 O
ARG B:300 B:289 52.0 NA H -65.5 -42.2 52.0 NA NA HOH
 2.963
 CD
 O
ARG C:300 E:289 109.0 0.484 H -61.4 -44.4 NA NA NA
ARG D:300 G:289 51.0 NA H -63.5 -43.6 NA NA NA
ARG E:300 M:289 98.0 0.436 H -63.4 -43.9 NA NA NA
ARG F:300 N:289 55.0 NA H -64.3 -45.3 NA NA NA
ARG G:300 S:289 114.0 0.507 H -63.0 -42.9 NA NA NA
ARG H:300 T:289 104.0 0.462 H -65.3 -45.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:291 A:289 118.0 0.524 H -59.7 -39.0 118.0 0.524 0.0 HOH
 3.708
 N
 O
ARG B:291 C:289 121.0 0.538 H -57.3 -46.3 121.0 0.538 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:289 A:289 116.0 0.516 H -66.0 -47.2 116.0 0.516 0.0 HOH
 2.649
 NH1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:289 A:289 107.0 0.476 H -62.3 -50.3 107.0 0.476 0.0 HOH
 6.769
 NH1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:284 A:289 133.0 0.591 H -56.6 -52.0 133.0 0.591 0.0 HOH
 2.122
 HH11
 O
ARG B:284 B:289 112.0 0.498 H -63.0 -46.2 112.0 0.498 0.0 HOH
 3.079
 HB2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:284 A:289 132.0 0.587 H -58.8 -51.1 132.0 0.587 0.0 HOH
 2.287
 HH11
 O
ARG B:284 B:289 99.0 0.44 H -63.2 -45.5 99.0 0.44 0.0 HOH
 3.094
 HB2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:289 A:289 116.0 0.516 H -59.6 -48.1 116.0 0.516 0.0 HOH
 3.593
 CG
 O
ARG B:289 B:289 102.0 0.453 H -68.4 -42.3 102.0 0.453 0.0 HOH
 3.779
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:289 A:289 97.0 0.431 H -63.0 -47.9