Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241816990 . G A CCDS2543.1:NM_000030.2:c.883Gcg>Acg_NP_000021.1:p.295A>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:295 A:295 3.0 0.026 H -57.6 -38.4 3.0 0.026 0.0 GOL
HOH
 6.453
5.048
 N
CB
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:295 A:295 3.0 0.026 H -62.9 -31.0 3.0 0.026 0.0 HOH
 4.408
 CB
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:295 A:295 4.0 0.035 H -48.8 -50.6 4.0 0.035 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:295 A:295 6.0 0.052 H -48.4 -56.8 6.0 0.052 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:297 A:295 4.0 0.035 H -66.5 -44.2 4.0 0.035 0.0 HOH
 3.792
 CB
 O
ALA C:297 C:295 4.0 0.035 H -62.1 -47.5 4.0 0.035 0.0 HOH
 3.437
 CB
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:295 A:295 5.0 0.043 H -50.9 -38.6 5.0 0.043 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:297 A:295 3.0 0.026 H -64.1 -46.5 3.0 0.026 0.0 BME
HOH
 9.229
3.630
 O
CB
 C1
O
ALA B:297 C:295 3.0 0.026 H -69.1 -38.4 3.0 0.026 0.0 HOH
 3.616
 CB
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:297 A:295 4.0 0.035 H -62.6 -52.9 4.0 0.035 0.0
ALA B:297 B:295 3.0 0.026 H -61.3 -53.0 3.0 0.026 0.0
ALA C:297 C:295 4.0 0.035 H -62.1 -52.3 NA NA NA
ALA D:297 D:295 4.0 0.035 H -61.4 -53.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:295 A:295 4.0 0.035 H -55.3 -35.5 4.0 0.035 0.0 GOL
HOH
 6.533
5.130
 N
CB
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:306 A:295 4.0 0.035 H -62.4 -42.2 4.0 0.035 0.0 HOH
 3.937
 CB
 O
ALA B:306 B:295 4.0 0.035 H -65.2 -40.4 4.0 0.035 0.0 HOH
 3.797
 CB
 O
ALA C:306 E:295 4.0 0.035 H -65.1 -38.8 NA NA NA
ALA D:306 G:295 5.0 0.043 H -62.1 -40.3 NA NA NA
ALA E:306 M:295 4.0 0.035 H -64.0 -41.6 NA NA NA
ALA F:306 N:295 4.0 0.035 H -65.6 -44.1 NA NA NA
ALA G:306 S:295 4.0 0.035 H -63.9 -46.7 NA NA NA
ALA H:306 T:295 4.0 0.035 H -65.6 -40.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:297 A:295 2.0 0.017 H -54.1 -46.9 2.0 0.017 0.0 HOH
 9.892
 N
 O
ALA B:297 C:295 2.0 0.017 H -60.7 -46.3 2.0 0.017 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:295 A:295 3.0 0.026 H -63.6 -39.9 3.0 0.026 0.0 HOH
 3.619
 CB
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:295 A:295 6.0 0.052 H -56.2 -41.2 6.0 0.052 0.0 HOH
 4.818
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:290 A:295 3.0 0.026 H -62.2 -44.3 3.0 0.026 0.0 HOH
 2.747
 HB3
 O
ALA B:290 B:295 3.0 0.026 H -71.5 -41.7 3.0 0.026 0.0 HOH
 2.906
 HB3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:290 A:295 2.0 0.017 H -63.6 -41.4 2.0 0.017 0.0 HOH
 2.894
 HB3
 O
ALA B:290 B:295 3.0 0.026 H -68.9 -43.1 3.0 0.026 0.0 HOH
 2.919
 HB3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:295 A:295 4.0 0.035 H -62.2 -47.2 4.0 0.035 0.0 HOH
 5.041
 CB
 O
ALA B:295 B:295 4.0 0.035 H -66.3 -41.3 4.0 0.035 0.0 HOH
 3.702
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:295 A:295 3.0 0.026 H -64.5 -44.8