Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817000 . T A CCDS2543.1:NM_000030.2:c.893cTg>cAg_NP_000021.1:p.298L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:298 A:298 0.0 0.0 H -59.2 -38.2 0.0 0.0 0.0 GOL
HOH
 8.950
6.269
 N
N
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:298 A:298 0.0 0.0 H -51.3 -56.0 0.0 0.0 0.0 HOH
 4.000
 CD2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:298 A:298 0.0 0.0 H -52.5 -48.2 0.0 0.0 0.0 HOH
 8.959
 CD2
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:298 A:298 20.0 NA H -55.9 -46.7 20.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:300 A:298 0.0 0.0 H -56.3 -47.0 0.0 0.0 0.0 HOH
 3.584
 CD2
 O
LEU C:300 C:298 0.0 0.0 H -66.0 -45.2 0.0 0.0 0.0 HOH
 3.644
 CD2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:298 A:298 0.0 0.0 H -54.9 -50.3 0.0 0.0 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:300 A:298 0.0 0.0 H -54.5 -43.1 0.0 0.0 0.0 BME
HOH
 7.183
3.698
 N
CD2
 C1
O
LEU B:300 C:298 0.0 0.0 H -59.9 -44.9 0.0 0.0 0.0 HOH
 3.795
 CD2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:300 A:298 0.0 0.0 H -69.6 -51.4 0.0 0.0 0.0
LEU B:300 B:298 0.0 0.0 H -68.8 -51.9 0.0 0.0 0.0
LEU C:300 C:298 0.0 0.0 H -68.3 -51.6 NA NA NA
LEU D:300 D:298 0.0 0.0 H -69.3 -51.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:298 A:298 0.0 0.0 H -52.5 -44.8 0.0 0.0 0.0 GOL
HOH
 8.762
3.614
 N
CD2
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:309 A:298 0.0 0.0 H -60.0 -43.4 0.0 0.0 0.0 HOH
 3.840
 CD2
 O
LEU B:309 B:298 0.0 0.0 H -57.6 -47.1 0.0 0.0 0.0 HOH
 3.776
 CD2
 O
LEU C:309 E:298 0.0 0.0 H -59.2 -46.4 NA NA NA
LEU D:309 G:298 0.0 0.0 H -59.2 -46.1 NA NA NA
LEU E:309 M:298 0.0 0.0 H -55.9 -43.1 NA NA NA
LEU F:309 N:298 0.0 0.0 H -60.5 -42.6 NA NA NA
LEU G:309 S:298 0.0 0.0 H -61.6 -39.6 NA NA NA
LEU H:309 T:298 0.0 0.0 H -56.4 -43.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:300 A:298 0.0 0.0 H -64.8 -45.5 0.0 0.0 0.0 HOH
 8.764
 CD2
 O
LEU B:300 C:298 0.0 0.0 H -64.2 -43.4 0.0 0.0 0.0 HOH
 8.988
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:298 A:298 0.0 0.0 H -57.8 -41.7 0.0 0.0 0.0 HOH
 3.895
 CD2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:298 A:298 0.0 0.0 H -60.4 -41.5 0.0 0.0 0.0 HOH
 3.702
 CD2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:293 A:298 0.0 0.0 H -60.4 -46.6 0.0 0.0 0.0 HOH
 3.228
 HD23
 O
LEU B:293 B:298 0.0 0.0 H -57.4 -42.5 0.0 0.0 0.0 HOH
 3.231
 HD23
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:293 A:298 0.0 0.0 H -59.3 -44.6 0.0 0.0 0.0 HOH
 3.235
 HD23
 O
LEU B:293 B:298 0.0 0.0 H -57.0 -39.9 0.0 0.0 0.0 HOH
 3.253
 HD23
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:298 A:298 0.0 0.0 H -66.2 -44.9 0.0 0.0 0.0 HOH
 3.791
 CD2
 O
LEU B:298 B:298 0.0 0.0 H -54.8 -51.9 0.0 0.0 0.0 HOH
 3.875
 CD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:298 A:298 0.0 0.0 H -58.4 -46.0