Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817002 . C A CCDS2543.1:NM_000030.2:c.895Cat>Aat_NP_000021.1:p.299H>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 HIS A:299 A:299 22.0 0.113 H -64.3 -44.8 22.0 0.113 0.0 HOH
 3.283
 NE2
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 HIS A:299 A:299 19.0 0.097 H -45.4 -48.7 19.0 0.097 0.0 HOH
 2.648
 NE2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 HIS A:299 A:299 14.0 0.072 H -63.7 -34.7 14.0 0.072 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 HIS A:299 A:299 31.0 0.159 H -57.7 -46.5 31.0 0.159 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 HIS A:301 A:299 22.0 0.113 H -62.3 -42.4 22.0 0.113 0.0 HOH
 2.563
 ND1
 O
HIS C:301 C:299 20.0 0.103 H -61.1 -46.8 20.0 0.103 0.0 HOH
 2.764
 ND1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 HIS A:299 A:299 19.0 0.097 H -53.7 -38.7 19.0 0.097 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 HIS A:301 A:299 17.0 0.087 H -60.0 -36.7 17.0 0.087 0.0 BME
HOH
 8.418
2.951
 C
NE2
 C1
O
HIS B:301 C:299 24.0 0.123 H -53.1 -47.7 24.0 0.123 0.0 HOH
 2.904
 NE2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 HIS A:301 A:299 25.0 0.128 H -46.3 -51.8 25.0 0.128 0.0
HIS B:301 B:299 26.0 0.133 H -45.1 -52.1 26.0 0.133 0.0
HIS C:301 C:299 26.0 0.133 H -46.2 -51.1 NA NA NA
HIS D:301 D:299 26.0 0.133 H -46.0 -51.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 HIS A:299 A:299 19.0 0.097 H -60.4 -47.8 19.0 0.097 0.0 HOH
 3.190
 NE2
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 HIS A:310 A:299 20.0 0.103 H -60.0 -41.4 20.0 0.103 0.0 HOH
 2.895
 NE2
 O
HIS B:310 B:299 20.0 0.103 H -59.7 -41.2 20.0 0.103 0.0 HOH
 2.498
 ND1
 O
HIS C:310 E:299 18.0 0.092 H -59.0 -42.1 NA NA NA
HIS D:310 G:299 20.0 0.103 H -60.5 -40.3 NA NA NA
HIS E:310 M:299 20.0 0.103 H -65.3 -42.1 NA NA NA
HIS F:310 N:299 20.0 0.103 H -61.3 -40.6 NA NA NA
HIS G:310 S:299 19.0 0.097 H -64.9 -42.6 NA NA NA
HIS H:310 T:299 20.0 0.103 H -63.4 -42.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 HIS A:301 A:299 23.0 0.118 H -51.8 -44.0 23.0 0.118 0.0 HOH
 9.290
 CE1
 O
HIS B:301 C:299 26.0 0.133 H -51.5 -47.1 26.0 0.133 0.0 HOH
 6.354
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 HIS A:299 A:299 17.0 0.087 H -58.6 -41.9 17.0 0.087 0.0 HOH
 3.770
 NE2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 HIS A:299 A:299 16.0 0.082 H -65.0 -41.5 16.0 0.082 0.0 HOH
 3.736
 NE2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 HIS A:294 A:299 19.0 0.097 H -54.9 -43.6 19.0 0.097 0.0 HOH
 1.583
 HD1
 O
HIS B:294 B:299 23.0 0.118 H -58.6 -45.5 23.0 0.118 0.0 HOH
 2.421
 HE1
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 HIS A:294 A:299 20.0 0.103 H -56.7 -44.1 20.0 0.103 0.0 HOH
 1.581
 HD1
 O
HIS B:294 B:299 23.0 0.118 H -62.1 -44.2 23.0 0.118 0.0 HOH
 2.366
 HE1
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 HIS A:299 A:299 19.0 0.097 H -60.4 -41.9 19.0 0.097 0.0 HOH
 2.903
 NE2
 O
HIS B:299 B:299 15.0 0.077 H -59.0 -41.3 15.0 0.077 0.0 HOH
 2.965
 NE2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 HIS A:299 A:299 21.0 0.108 H -58.3 -47.9