Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817452 . C A CCDS2543.1:NM_000030.2:c.956cCc>cAc_NP_000021.1:p.319P>H Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 PRO A:319 A:319 13.0 0.09 T -52.8 -50.5 13.0 0.09 0.0 HOH
 4.165
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 PRO A:319 A:319 12.0 0.083 S -70.1 -25.3 12.0 0.083 0.0 HOH
 2.612
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:319 A:319 13.0 0.09 S -59.3 -30.6 13.0 0.09 0.0 HOH
 8.440
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:319 A:319 14.0 0.097 S -51.5 -54.2 14.0 0.097 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 PRO A:321 A:319 15.0 0.103 T -59.4 -36.6 15.0 0.103 0.0 HOH
 2.638
 O
 O
PRO C:321 C:319 15.0 0.103 S -68.8 -26.7 15.0 0.103 0.0 HOH
 2.861
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 PRO A:319 A:319 15.0 0.103 T -55.7 -44.2 15.0 0.103 0.0 HOH
 9.571
 CB
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 PRO A:321 A:319 12.0 0.083 S -60.9 -41.5 12.0 0.083 0.0 BME
HOH
 8.701
2.924
 CD
O
 O1
O
PRO B:321 C:319 14.0 0.097 T -63.3 -33.5 14.0 0.097 0.0 HOH
 2.827
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 PRO A:321 A:319 9.0 0.062 T -63.9 -34.3 9.0 0.062 0.0
PRO B:321 B:319 10.0 0.069 T -57.6 -37.6 10.0 0.069 0.0
PRO C:321 C:319 11.0 0.076 S -61.8 -35.0 NA NA NA
PRO D:321 D:319 10.0 0.069 T -58.2 -37.5 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 PRO A:319 A:319 12.0 0.083 T -54.1 -44.0 12.0 0.083 0.0 HOH
 2.939
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 PRO A:330 A:319 15.0 0.103 T -58.1 -33.9 15.0 0.103 0.0 HOH
 2.981
 O
 O
PRO B:330 B:319 16.0 0.11 T -62.9 -34.1 16.0 0.11 0.0 HOH
 2.995
 O
 O
PRO C:330 E:319 15.0 0.103 T -58.7 -32.3 NA NA NA
PRO D:330 G:319 15.0 0.103 T -59.6 -33.8 NA NA NA
PRO E:330 M:319 15.0 0.103 T -55.2 -39.2 NA NA NA
PRO F:330 N:319 13.0 0.09 T -57.0 -35.4 NA NA NA
PRO G:330 S:319 16.0 0.11 T -61.8 -32.9 NA NA NA
PRO H:330 T:319 17.0 0.117 T -58.8 -34.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 PRO A:321 A:319 13.0 0.09 T -57.5 -35.4 13.0 0.09 0.0 HOH
 7.224
 CG
 O
PRO B:321 C:319 13.0 0.09 S -60.6 -36.4 13.0 0.09 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 PRO A:319 A:319 13.0 0.09 S -62.8 -33.8 13.0 0.09 0.0 HOH
 2.701
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 PRO A:319 A:319 12.0 0.083 S -67.9 -36.8 12.0 0.083 0.0 HOH
 2.570
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 PRO A:314 A:319 14.0 0.097 T -58.6 -35.6 14.0 0.097 0.0 HOH
 2.690
 HG3
 O
PRO B:314 B:319 13.0 0.09 T -56.8 -36.8 13.0 0.09 0.0 HOH
 2.803
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 PRO A:314 A:319 14.0 0.097 T -62.1 -35.4 14.0 0.097 0.0 HOH
 2.779
 HA
 O
PRO B:314 B:319 13.0 0.09 T -56.7 -38.8 13.0 0.09 0.0 HOH
 2.754
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 PRO A:319 A:319 14.0 0.097 T -60.8 -33.7 14.0 0.097 0.0 HOH
 2.766
 O
 O
PRO B:319 B:319 14.0 0.097 T -56.5 -33.3 14.0 0.097 0.0 HOH
 2.645
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 PRO A:319 A:319 17.0 0.117 T -61.4 -31.4