Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817492 . G A CCDS2543.1:NM_000030.2:c.996tgG>tgA_NP_000021.1:p.332W>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 TRP A:332 A:332 67.0 0.263 H -48.4 -42.3 67.0 0.263 0.0 GOL
HOH
 4.240
5.334
 CH2
CH2
 O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 TRP A:332 A:332 71.0 0.278 H -68.2 -37.0 71.0 0.278 0.0 HOH
 7.884
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TRP A:332 A:332 75.0 0.294 H -46.6 -48.2 75.0 0.294 0.0 HOH
 8.270
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TRP A:332 A:332 127.0 0.498 H -55.8 -48.0 127.0 0.498 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 TRP A:334 A:332 49.0 0.192 H -53.7 -36.2 49.0 0.192 0.0 HOH
 3.019
 N
 O
TRP C:334 C:332 46.0 0.18 H -56.9 -35.3 46.0 0.18 0.0 HOH
 2.719
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 TRP A:332 A:332 72.0 0.282 H -54.2 -39.2 72.0 0.282 0.0 HOH
 3.077
 CE2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 TRP A:334 A:332 60.0 0.235 H -47.4 -33.7 60.0 0.235 0.0 BME
HOH
 3.742
2.897
 CZ3
N
 C1
O
TRP B:334 C:332 53.0 0.208 H -52.2 -35.4 53.0 0.208 0.0 BME
HOH
 3.413
2.925
 CZ3
N
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 TRP A:334 A:332 57.0 0.224 H -62.5 -30.4 57.0 0.224 0.0 GOL
 9.309
 CH2
 O2
TRP B:334 B:332 57.0 0.224 H -61.3 -32.3 57.0 0.224 0.0
TRP C:334 C:332 58.0 0.227 H -62.2 -30.8 NA NA NA
TRP D:334 D:332 57.0 0.224 H -60.4 -31.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 TRP A:332 A:332 62.0 0.243 H -42.5 -33.2 62.0 0.243 0.0 HOH
 4.220
 CH2
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 TRP A:343 A:332 73.0 0.286 H -58.5 -31.9 73.0 0.286 0.0 HOH
 2.954
 N
 O
TRP B:343 B:332 74.0 0.29 H -50.0 -32.7 74.0 0.29 0.0 HOH
 3.075
 N
 O
TRP C:343 E:332 76.0 0.298 H -55.9 -31.2 NA NA NA
TRP D:343 G:332 77.0 0.302 H -54.6 -37.9 NA NA NA
TRP E:343 M:332 75.0 0.294 H -61.1 -31.8 NA NA NA
TRP F:343 N:332 66.0 0.259 H -51.1 -32.6 NA NA NA
TRP G:343 S:332 71.0 0.278 H -59.0 -30.0 NA NA NA
TRP H:343 T:332 75.0 0.294 H -56.1 -34.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 TRP A:334 A:332 60.0 0.235 H -53.4 -32.9 60.0 0.235 0.0 HOH
 5.351
 CH2
 O
TRP B:334 C:332 59.0 0.231 H -53.9 -36.8 59.0 0.231 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 TRP A:332 A:332 51.0 0.2 H -59.9 -36.0 51.0 0.2 0.0 HOH
 5.091
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 TRP A:332 A:332 74.0 0.29 H -53.2 -30.4 74.0 0.29 0.0 HOH
 6.291
 CZ3
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 TRP A:327 A:332 72.0 0.282 H -56.8 -30.3 72.0 0.282 0.0 HOH
 2.075
 H
 O
TRP B:327 B:332 68.0 0.267 H -55.9 -30.5 68.0 0.267 0.0 HOH
 2.023
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 TRP A:327 A:332 72.0 0.282 H -55.9 -31.3 72.0 0.282 0.0 HOH
 2.184
 H
 O
TRP B:327 B:332 67.0 0.263 H -55.9 -29.7 67.0 0.263 0.0 HOH
 2.195
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 TRP A:332 A:332 49.0 0.192 H -67.8 -33.7 49.0 0.192 0.0 GOL
HOH
 7.062
3.246
 O
CD2
 O1
O
TRP B:332 B:332 55.0 0.216 H -69.2 -35.8 55.0 0.216 0.0 HOH
 2.861
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 TRP A:332 A:332 72.0 0.282 H -61.8 -26.9