Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817493 . A C CCDS2543.1:NM_000030.2:c.997Aga>Cga_NP_000021.1:p.333R>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:333 A:333 158.0 0.702 H -47.7 -41.9 158.0 0.702 0.0 GOL
HOH
 3.340
6.092
 CG
O
 O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:333 A:333 144.0 0.64 H -58.8 -39.3 144.0 0.64 0.0 HOH
 5.316
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:333 A:333 151.0 0.671 H -56.3 -31.6 151.0 0.671 0.0 HOH
 7.430
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:333 A:333 47.0 NA H -45.8 -47.3 47.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:335 A:333 126.0 0.56 H -58.8 -39.2 126.0 0.56 0.0 HOH
 3.014
 CG
 O
ARG C:335 C:333 146.0 0.649 H -63.0 -40.7 72.0 0.32 0.329 D:P50542:0.329
 HOH
 3.759
 NH1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:333 A:333 145.0 0.644 H -59.3 -37.5 145.0 0.644 0.0 HOH
 6.341
 CG
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:335 A:333 147.0 0.653 H -65.8 -36.2 142.0 0.631 0.022 C:P50542:0.022
 BME
HOH
 6.706
3.806
 CG
O
 S2
O
ARG B:335 C:333 136.0 0.604 H -62.6 -34.8 135.0 0.6 0.004 D:P50542:0.004
 BME
HOH
 6.703
3.286
 CG
O
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:335 A:333 137.0 0.609 H -60.4 -44.5 137.0 0.609 0.0
ARG B:335 B:333 136.0 0.604 H -60.0 -43.0 136.0 0.604 0.0
ARG C:335 C:333 138.0 0.613 H -61.1 -42.4 NA NA NA
ARG D:335 D:333 135.0 0.6 H -60.9 -43.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:333 A:333 156.0 0.693 H -62.5 -34.7 156.0 0.693 0.0 HOH
 2.767
 NE
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:344 A:333 144.0 0.64 H -62.7 -35.8 144.0 0.64 0.0 HOH
 3.054
 O
 O
ARG B:344 B:333 153.0 0.68 H -63.2 -38.2 153.0 0.68 0.0 HOH
 3.072
 O
 O
ARG C:344 E:333 148.0 0.658 H -62.7 -40.4 NA NA NA
ARG D:344 G:333 148.0 0.658 H -59.6 -35.9 NA NA NA
ARG E:344 M:333 144.0 0.64 H -66.0 -34.4 NA NA NA
ARG F:344 N:333 134.0 0.596 H -63.9 -38.8 NA NA NA
ARG G:344 S:333 146.0 0.649 H -61.8 -40.5 NA NA NA
ARG H:344 T:333 146.0 0.649 H -62.6 -36.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:335 A:333 147.0 0.653 H -62.1 -37.7 123.0 0.547 0.106 C:P50542:0.107
 HOH
 9.146
 CG
 O
ARG B:335 C:333 146.0 0.649 H -57.5 -39.2 133.0 0.591 0.058 D:P50542:0.058
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:333 A:333 137.0 0.609 H -53.7 -36.4 137.0 0.609 0.0 HOH
 2.246
 NH1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:333 A:333 141.0 0.627 H -63.8 -39.4 141.0 0.627 0.0 HOH
 7.387
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:328 A:333 146.0 0.649 H -64.7 -34.6 146.0 0.649 0.0 HOH
 1.836
 HH22
 O
ARG B:328 B:333 146.0 0.649 H -64.0 -35.0 146.0 0.649 0.0 HOH
 2.959
 HB2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:328 A:333 144.0 0.64 H -63.9 -36.9 144.0 0.64 0.0 HOH
 1.813
 HH22
 O
ARG B:328 B:333 147.0 0.653 H -61.9 -36.1 147.0 0.653 0.0 HOH
 2.992
 HH21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:333 A:333 146.0 0.649 H -60.3 -44.5 146.0 0.649 0.0 GOL
HOH
 4.333
2.690
 O
NE
 O1
O
ARG B:333 B:333 150.0 0.667 H -58.8 -44.5 150.0 0.667 0.0 GOL
HOH
 9.463
5.005
 O
N
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:333 A:333 143.0 0.636 H -67.2 -41.3