Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817503 . T A CCDS2543.1:NM_000030.2:c.1007gTc>gAc_NP_000021.1:p.336V>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 VAL A:336 A:336 26.0 0.168 H -57.1 -46.1 26.0 0.168 0.0 GOL
HOH
 3.549
2.821
 CG1
O
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 VAL A:336 A:336 27.0 0.174 H -49.6 -49.3 27.0 0.174 0.0 HOH
 2.791
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:336 A:336 27.0 0.174 H -45.0 -48.1 27.0 0.174 0.0 HOH
 2.525
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:336 A:336 31.0 0.2 H -58.2 -45.7 31.0 0.2 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 VAL A:338 A:336 25.0 0.161 H -62.6 -43.5 25.0 0.161 0.0 HOH
 2.773
 O
 O
VAL C:338 C:336 25.0 0.161 H -55.1 -49.1 25.0 0.161 0.0 HOH
 2.913
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 VAL A:336 A:336 26.0 0.168 H -53.1 -49.5 26.0 0.168 0.0 HOH
 6.610
 CG2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 VAL A:338 A:336 27.0 0.174 H -61.6 -48.3 27.0 0.174 0.0 BME
HOH
 4.256
2.874
 CG1
O
 S2
O
VAL B:338 C:336 26.0 0.168 H -62.1 -45.5 26.0 0.168 0.0 BME
HOH
 4.616
2.761
 CG1
O
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 VAL A:338 A:336 26.0 0.168 H -45.1 -45.2 26.0 0.168 0.0 GOL
 9.082
 O
 O1
VAL B:338 B:336 26.0 0.168 H -44.8 -46.2 26.0 0.168 0.0
VAL C:338 C:336 26.0 0.168 H -46.1 -45.1 NA NA NA
VAL D:338 D:336 26.0 0.168 H -46.3 -45.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 VAL A:336 A:336 30.0 0.194 H -63.6 -48.1 30.0 0.194 0.0 HOH
 4.174
 CG1
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 VAL A:347 A:336 27.0 0.174 H -59.1 -47.9 27.0 0.174 0.0 HOH
 2.927
 O
 O
VAL B:347 B:336 26.0 0.168 H -61.4 -45.1 26.0 0.168 0.0 HOH
 2.807
 O
 O
VAL C:347 E:336 27.0 0.174 H -57.5 -43.7 NA NA NA
VAL D:347 G:336 23.0 0.148 H -55.7 -46.1 NA NA NA
VAL E:347 M:336 27.0 0.174 H -54.5 -48.7 NA NA NA
VAL F:347 N:336 28.0 0.181 H -54.9 -45.6 NA NA NA
VAL G:347 S:336 28.0 0.181 H -49.6 -50.2 NA NA NA
VAL H:347 T:336 27.0 0.174 H -56.9 -48.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 VAL A:338 A:336 29.0 0.187 H -57.0 -44.5 29.0 0.187 0.0 HOH
 7.159
 CG2
 O
VAL B:338 C:336 28.0 0.181 H -50.3 -44.2 28.0 0.181 0.0 HOH
 8.861
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 VAL A:336 A:336 27.0 0.174 H -46.8 -51.7 27.0 0.174 0.0 HOH
 2.725
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 VAL A:336 A:336 30.0 0.194 H -56.9 -47.6 30.0 0.194 0.0 HOH
 2.864
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 VAL A:331 A:336 26.0 0.168 H -59.1 -44.9 26.0 0.168 0.0 HOH
 2.691
 O
 O
VAL B:331 B:336 28.0 0.181 H -63.2 -43.5 28.0 0.181 0.0 HOH
 2.710
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 VAL A:331 A:336 27.0 0.174 H -56.5 -47.4 27.0 0.174 0.0 HOH
 2.729
 O
 O
VAL B:331 B:336 27.0 0.174 H -62.8 -43.0 27.0 0.174 0.0 HOH
 2.749
 HG13
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 VAL A:336 A:336 33.0 0.213 H -55.9 -46.8 33.0 0.213 0.0 GOL
HOH
 3.644
2.742
 CG1
O
 C3
O
VAL B:336 B:336 30.0 0.194 H -58.5 -46.7 30.0 0.194 0.0 GOL
HOH
 6.069
2.735
 CG1
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 VAL A:336 A:336 24.0 0.155 H -62.0 -46.5