Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817510 . C A CCDS2543.1:NM_000030.2:c.1014taC>taA_NP_000021.1:p.338Y>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 TYR A:338 A:338 43.0 0.187 H -55.8 -44.0 43.0 0.187 0.0 GOL
HOH
 6.398
4.351
 N
CD1
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 TYR A:338 A:338 40.0 0.174 H -51.0 -42.4 40.0 0.174 0.0 HOH
 2.955
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:338 A:338 37.0 0.161 H -53.2 -49.6 37.0 0.161 0.0 HOH
 5.710
 C
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 TYR A:338 A:338 72.0 0.313 H -48.3 -56.7 72.0 0.313 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 TYR A:340 A:338 37.0 0.161 H -59.5 -43.3 37.0 0.161 0.0 HOH
 3.142
 OH
 O
TYR C:340 C:338 32.0 0.139 H -61.2 -41.9 32.0 0.139 0.0 HOH
 3.380
 CA
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 TYR A:338 A:338 41.0 0.178 H -51.3 -46.9 41.0 0.178 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 TYR A:340 A:338 42.0 0.183 H -58.0 -44.7 42.0 0.183 0.0 BME
HOH
 9.806
2.931
 N
OH
 S2
O
TYR B:340 C:338 46.0 0.2 H -57.2 -47.5 46.0 0.2 0.0 HOH
 3.584
 CA
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 TYR A:340 A:338 39.0 0.17 H -60.8 -50.1 39.0 0.17 0.0 GOL
 9.418
 O
 O1
TYR B:340 B:338 28.0 0.122 H -62.7 -48.4 28.0 0.122 0.0
TYR C:340 C:338 35.0 0.152 H -64.2 -47.9 NA NA NA
TYR D:340 D:338 31.0 0.135 H -60.8 -49.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 TYR A:338 A:338 42.0 0.183 H -60.8 -36.6 42.0 0.183 0.0 GOL
HOH
 9.851
3.544
 O
OH
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 TYR A:349 A:338 44.0 0.191 H -65.4 -39.1 44.0 0.191 0.0 HOH
 2.655
 OH
 O
TYR B:349 B:338 45.0 0.196 H -57.5 -41.0 45.0 0.196 0.0 HOH
 2.612
 OH
 O
TYR C:349 E:338 45.0 0.196 H -61.6 -37.9 NA NA NA
TYR D:349 G:338 43.0 0.187 H -63.9 -41.4 NA NA NA
TYR E:349 M:338 42.0 0.183 H -58.8 -42.2 NA NA NA
TYR F:349 N:338 42.0 0.183 H -63.6 -38.6 NA NA NA
TYR G:349 S:338 40.0 0.174 H -64.6 -39.7 NA NA NA
TYR H:349 T:338 44.0 0.191 H -62.5 -38.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 TYR A:340 A:338 40.0 0.174 H -63.9 -40.6 40.0 0.174 0.0
TYR B:340 C:338 42.0 0.183 H -52.1 -50.5 42.0 0.183 0.0 HOH
 4.751
 OH
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 TYR A:338 A:338 47.0 0.204 H -67.7 -37.2 47.0 0.204 0.0 HOH
 2.390
 OH
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 TYR A:338 A:338 39.0 0.17 H -61.9 -44.6 39.0 0.17 0.0 HOH
 5.856
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 TYR A:333 A:338 37.0 0.161 H -59.9 -42.3 37.0 0.161 0.0 HOH
 2.494
 HA
 O
TYR B:333 B:338 37.0 0.161 H -56.0 -43.5 37.0 0.161 0.0 HOH
 2.429
 HA
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 TYR A:333 A:338 37.0 0.161 H -62.6 -40.9 37.0 0.161 0.0 HOH
 2.556
 HA
 O
TYR B:333 B:338 38.0 0.165 H -54.6 -46.2 38.0 0.165 0.0 HOH
 2.371
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 TYR A:338 A:338 60.0 0.261 H -62.9 -44.8 60.0 0.261 0.0 GOL
HOH
 5.990
3.384
 N
OH
 C2
O
TYR B:338 B:338 65.0 0.283 H -61.7 -45.8 65.0 0.283 0.0 GOL
HOH
 9.174
3.221
 N
CA
 C2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 TYR A:338 A:338 43.0 0.187 H -60.5 -41.3