Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817519 . C A CCDS2543.1:NM_000030.2:c.1023gaC>gaA_NP_000021.1:p.341D>E Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASP A:341 A:341 113.0 0.753 H -74.4 -48.2 113.0 0.753 0.0 GOL
GOL
HOH
 6.481
8.965
2.878
 OD1
O
OD2
 O3
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASP A:341 A:341 110.0 0.733 H -63.9 -53.2 110.0 0.733 0.0 HOH
 3.733
 OD2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:341 A:341 119.0 0.793 H -60.2 -49.0 119.0 0.793 0.0 HOH
 5.360
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:341 A:341 88.0 NA H -55.6 -48.7 88.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASP A:343 A:341 116.0 0.773 H -68.1 -29.4 116.0 0.773 0.0 HOH
 2.937
 OD2
 O
ASP C:343 C:341 120.0 0.8 H -64.1 -32.0 120.0 0.8 0.0 HOH
 3.187
 OD2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASP A:341 A:341 121.0 0.807 H -60.5 -39.4 121.0 0.807 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASP A:343 A:341 115.0 0.767 H -62.6 -40.3 115.0 0.767 0.0 HOH
 2.696
 OD1
 O
ASP B:343 C:341 119.0 0.793 H -65.0 -33.4 119.0 0.793 0.0 HOH
 2.706
 OD2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASP A:343 A:341 118.0 0.787 H -72.0 -37.4 118.0 0.787 0.0 GOL
 4.522
 OD1
 O1
ASP B:343 B:341 115.0 0.767 H -72.6 -36.3 115.0 0.767 0.0
ASP C:343 C:341 118.0 0.787 H -70.0 -39.1 NA NA NA
ASP D:343 D:341 112.0 0.747 H -70.5 -37.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASP A:341 A:341 116.0 0.773 H -64.4 -38.0 116.0 0.773 0.0 GOL
HOH
 9.074
4.880
 O
OD1
 C2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASP A:352 A:341 113.0 0.753 H -68.1 -39.7 113.0 0.753 0.0 HOH
 2.642
 OD2
 O
ASP B:352 B:341 111.0 0.74 H -66.8 -42.8 111.0 0.74 0.0 HOH
 2.748
 O
 O
ASP C:352 E:341 116.0 0.773 H -67.5 -38.3 NA NA NA
ASP D:352 G:341 116.0 0.773 H -69.6 -36.8 NA NA NA
ASP E:352 M:341 117.0 0.78 H -67.5 -38.4 NA NA NA
ASP F:352 N:341 117.0 0.78 H -71.6 -41.7 NA NA NA
ASP G:352 S:341 116.0 0.773 H -65.1 -42.8 NA NA NA
ASP H:352 T:341 114.0 0.76 H -72.6 -42.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASP A:343 A:341 108.0 0.72 H -65.1 -42.2 108.0 0.72 0.0
ASP B:343 C:341 118.0 0.787 H -68.7 -39.0 118.0 0.787 0.0 HOH
 6.550
 OD1
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASP A:341 A:341 114.0 0.76 H -58.3 -33.1 114.0 0.76 0.0 HOH
 4.553
 OD2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASP A:341 A:341 117.0 0.78 H -61.4 -42.1 117.0 0.78 0.0 HOH
 2.610
 OD1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASP A:336 A:341 120.0 0.8 H -71.4 -32.6 113.0 0.753 0.047 B:P21549:0.047
 HOH
 2.288
 OD1
 O
ASP B:336 B:341 117.0 0.78 H -61.4 -39.2 112.0 0.747 0.033 A:P21549:0.033
 HOH
 2.795
 OD1
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASP A:336 A:341 119.0 0.793 H -68.9 -33.4 105.0 0.7 0.093 B:P21549:0.093
 HOH
 2.305
 OD1
 O
ASP B:336 B:341 117.0 0.78 H -64.8 -36.8 107.0 0.713 0.067 A:P21549:0.067
 HOH
 2.524
 OD1
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASP A:341 A:341 118.0 0.787 H -58.3 -39.0 112.0 0.747 0.04 B:P21549:0.04
 GOL
HOH
 4.508
2.628
 OD1
OD1
 O2
O
ASP B:341 B:341 118.0 0.787 H -61.9 -34.0 118.0 0.787 0.0 GOL
HOH
 6.200
3.107
 OD1
OD1
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASP A:341 A:341 120.0 0.8 H -72.2 -29.2