Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817526 . G A CCDS2543.1:NM_000030.2:c.1030Gac>Aac_NP_000021.1:p.344D>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASP A:344 A:344 95.0 0.633 62.4 29.8 95.0 0.633 0.0 GOL
HOH
 4.510
3.887
 O
OD1
 O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASP A:344 A:344 91.0 0.607 62.2 32.0 91.0 0.607 0.0 HOH
 6.620
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:344 A:344 85.0 0.567 56.4 33.6 85.0 0.567 0.0 HOH
 6.357
 C
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASP A:344 A:344 40.0 NA 67.7 37.1 40.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASP A:346 A:344 85.0 0.567 59.6 26.1 85.0 0.567 0.0 HOH
 2.916
 O
 O
ASP C:346 C:344 96.0 0.64 62.1 33.8 96.0 0.64 0.0 HOH
 2.769
 OD1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASP A:344 A:344 95.0 0.633 S 58.8 38.6 95.0 0.633 0.0 HOH
 5.136
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASP A:346 A:344 84.0 0.56 S 52.4 33.4 84.0 0.56 0.0 HOH
 2.863
 OD2
 O
ASP B:346 C:344 89.0 0.593 63.3 29.2 89.0 0.593 0.0 HOH
 2.807
 OD1
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASP A:346 A:344 88.0 0.587 47.8 34.9 88.0 0.587 0.0 GOL
 7.210
 OD1
 O1
ASP B:346 B:344 95.0 0.633 48.8 33.1 95.0 0.633 0.0
ASP C:346 C:344 88.0 0.587 50.1 32.9 NA NA NA
ASP D:346 D:344 86.0 0.573 49.1 32.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASP A:344 A:344 84.0 0.56 58.4 34.3 84.0 0.56 0.0 GOL
HOH
 3.880
3.659
 CB
OD1
 C2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASP A:355 A:344 95.0 0.633 55.3 38.4 95.0 0.633 0.0 HOH
 2.592
 OD1
 O
ASP B:355 B:344 91.0 0.607 55.6 31.7 91.0 0.607 0.0 HOH
 2.653
 OD1
 O
ASP C:355 E:344 90.0 0.6 59.3 33.6 NA NA NA
ASP D:355 G:344 88.0 0.587 53.4 35.3 NA NA NA
ASP E:355 M:344 96.0 0.64 57.0 31.5 NA NA NA
ASP F:355 N:344 91.0 0.607 53.6 35.2 NA NA NA
ASP G:355 S:344 91.0 0.607 50.4 36.7 NA NA NA
ASP H:355 T:344 94.0 0.627 60.9 30.5 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASP A:346 A:344 89.0 0.593 57.6 39.3 89.0 0.593 0.0
ASP B:346 C:344 86.0 0.573 51.9 44.1 86.0 0.573 0.0 HOH
 7.874
 OD1
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASP A:344 A:344 86.0 0.573 61.8 25.4 86.0 0.573 0.0 HOH
 6.204
 C
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASP A:344 A:344 72.0 0.48 60.6 24.9 72.0 0.48 0.0 HOH
 6.310
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASP A:339 A:344 87.0 0.58 55.5 35.0 87.0 0.58 0.0 HOH
 4.396
 HA
 O
ASP B:339 B:344 81.0 0.54 51.6 32.5 81.0 0.54 0.0 HOH
 2.477
 OD2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASP A:339 A:344 87.0 0.58 56.1 33.6 87.0 0.58 0.0 HOH
 4.630
 HA
 O
ASP B:339 B:344 75.0 0.5 58.0 31.1 75.0 0.5 0.0 HOH
 2.520
 OD2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASP A:344 A:344 93.0 0.62 58.8 31.1 93.0 0.62 0.0 GOL
HOH
 7.380
2.654
 C
OD2
 O3
O
ASP B:344 B:344 93.0 0.62 55.5 34.3 93.0 0.62 0.0 GOL
HOH
 7.679
2.666
 CA
OD1
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASP A:344 A:344 90.0 0.6 53.7 30.9