Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817541 . G A CCDS2543.1:NM_000030.2:c.1045Ggt>Agt_NP_000021.1:p.349G>S Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:349 A:349 4.0 0.053 E -115.7 -152.0 4.0 0.053 0.0 AOA
GOL
HOH
 6.577
7.576
3.012
 O
N
N
 O3
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:349 A:349 4.0 0.053 E -100.1 -157.5 4.0 0.053 0.0 HOH
 6.716
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:349 A:349 5.0 0.067 -87.9 -150.8 5.0 0.067 0.0 HOH
 8.092
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:349 A:349 23.0 0.307 B -88.7 173.9 23.0 0.307 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:351 A:349 5.0 0.067 -83.9 -149.2 5.0 0.067 0.0 HOH
 3.087
 N
 O
GLY C:351 C:349 6.0 0.08 -84.2 -154.9 6.0 0.08 0.0 HOH
 3.193
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:349 A:349 7.0 0.093 E -91.3 -155.5 7.0 0.093 0.0 DIO
HOH
 6.890
3.256
 O
CA
 C1'
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:351 A:349 4.0 0.053 -84.1 -149.0 4.0 0.053 0.0 BME
HOH
 3.213
3.618
 N
CA
 C1
O
GLY B:351 C:349 5.0 0.067 -93.3 -149.4 5.0 0.067 0.0 BME
HOH
 3.095
3.679
 N
CA
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:351 A:349 1.0 0.013 -81.0 -148.8 1.0 0.013 0.0 GOL
 6.377
 O
 O2
GLY B:351 B:349 2.0 0.027 -81.8 -148.9 2.0 0.027 0.0 GOL
 6.366
 O
 O2
GLY C:351 C:349 2.0 0.027 -81.9 -148.4 NA NA NA
GLY D:351 D:349 1.0 0.013 -80.4 -149.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:349 A:349 7.0 0.093 -91.9 -139.9 7.0 0.093 0.0 AOA
HOH
 6.605
2.839
 O
O
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:360 A:349 5.0 0.067 -75.2 -155.9 5.0 0.067 0.0 HOH
 2.939
 N
 O
GLY B:360 B:349 6.0 0.08 -81.0 -150.9 6.0 0.08 0.0 HOH
 2.961
 N
 O
GLY C:360 E:349 7.0 0.093 -83.5 -150.7 NA NA NA
GLY D:360 G:349 6.0 0.08 -79.1 -152.2 NA NA NA
GLY E:360 M:349 6.0 0.08 -83.0 -148.1 NA NA NA
GLY F:360 N:349 4.0 0.053 -87.1 -149.8 NA NA NA
GLY G:360 S:349 5.0 0.067 -81.2 -147.8 NA NA NA
GLY H:360 T:349 5.0 0.067 -82.5 -149.4 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:351 A:349 6.0 0.08 -92.7 -143.2 6.0 0.08 0.0 BME
HOH
 7.359
3.628
 O
N
 O1
O
GLY B:351 C:349 5.0 0.067 -97.8 -140.1 5.0 0.067 0.0 HOH
 8.170
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:349 A:349 1.0 0.013 E -117.0 -151.1 1.0 0.013 0.0 GOL
HOH
 6.810
7.433
 O
N
 C3
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:349 A:349 9.0 0.12 -95.9 -148.7 9.0 0.12 0.0 HOH
 3.339
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:344 A:349 5.0 0.067 -79.4 -146.3 5.0 0.067 0.0 HOH
 2.162
 H
 O
GLY B:344 B:349 6.0 0.08 -80.9 -148.2 6.0 0.08 0.0 HOH
 2.029
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:344 A:349 5.0 0.067 -79.3 -150.2 5.0 0.067 0.0 HOH
 2.185
 H
 O
GLY B:344 B:349 6.0 0.08 -81.3 -150.0 6.0 0.08 0.0 HOH
 1.846
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:349 A:349 9.0 0.12 -89.7 -148.5 9.0 0.12 0.0 GOL
HOH
 8.012
2.895
 N
N
 C3
O
GLY B:349 B:349 7.0 0.093 -84.8 -141.5 7.0 0.093 0.0 GOL
HOH
 9.583
2.894
 N
N
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:349 A:349 7.0 0.093 E -73.7 -176.8