Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817545 . G A CCDS2543.1:NM_000030.2:c.1049gGc>gAc_NP_000021.1:p.350G>D Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:350 A:350 14.0 0.187 -67.5 -172.2 14.0 0.187 0.0 AOA
GOL
HOH
 5.992
9.338
2.928
 O
O
O
 O3
C1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:350 A:350 14.0 0.187 -75.0 -175.5 14.0 0.187 0.0 HOH
 6.778
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:350 A:350 13.0 0.173 -73.9 -161.4 13.0 0.173 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:350 A:350 11.0 0.147 -98.0 134.4 11.0 0.147 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:352 A:350 17.0 0.227 -81.7 -176.3 17.0 0.227 0.0 HOH
 3.140
 N
 O
GLY C:352 C:350 15.0 0.2 -80.8 179.7 15.0 0.2 0.0 HOH
 2.886
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:350 A:350 12.0 0.16 -67.7 -156.1 12.0 0.16 0.0 DIO
HOH
 6.148
2.611
 O
N
 C1'
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:352 A:350 16.0 0.213 -83.8 -178.8 16.0 0.213 0.0 BME
HOH
 3.275
2.946
 O
N
 O1
O
GLY B:352 C:350 14.0 0.187 -88.0 179.9 14.0 0.187 0.0 BME
HOH
 2.965
2.966
 O
N
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:352 A:350 13.0 0.173 -87.2 -164.3 13.0 0.173 0.0 GOL
GOL
 5.436
9.316
 O
O
 O2
O3
GLY B:352 B:350 13.0 0.173 -86.1 -164.6 13.0 0.173 0.0 GOL
 5.675
 O
 O2
GLY C:352 C:350 12.0 0.16 -86.5 -164.9 NA NA NA
GLY D:352 D:350 13.0 0.173 -85.8 -164.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:350 A:350 16.0 0.213 -93.5 177.5 16.0 0.213 0.0 AOA
HOH
 6.287
2.399
 O
O
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:361 A:350 15.0 0.2 -86.4 -175.4 15.0 0.2 0.0 HOH
 2.796
 O
 O
GLY B:361 B:350 17.0 0.227 -91.3 -175.1 17.0 0.227 0.0 HOH
 2.716
 O
 O
GLY C:361 E:350 17.0 0.227 -90.7 -175.2 NA NA NA
GLY D:361 G:350 16.0 0.213 -89.5 -176.0 NA NA NA
GLY E:361 M:350 17.0 0.227 -89.2 -173.9 NA NA NA
GLY F:361 N:350 14.0 0.187 -88.9 -175.5 NA NA NA
GLY G:361 S:350 17.0 0.227 -95.2 -171.7 NA NA NA
GLY H:361 T:350 17.0 0.227 -89.0 -175.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:352 A:350 15.0 0.2 -77.2 176.3 15.0 0.2 0.0 BME
HOH
 7.415
2.727
 O
O
 O1
O
GLY B:352 C:350 13.0 0.173 -82.6 179.6 13.0 0.173 0.0 HOH
 7.993
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:350 A:350 13.0 0.173 -73.5 165.4 13.0 0.173 0.0 GOL
HOH
 6.567
8.425
 O
O
 C3
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:350 A:350 17.0 0.227 -83.3 -176.7 17.0 0.227 0.0 HOH
 2.729
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:345 A:350 17.0 0.227 -92.1 -175.6 17.0 0.227 0.0 HOH
 2.053
 H
 O
GLY B:345 B:350 12.0 0.16 -91.7 -170.7 12.0 0.16 0.0 HOH
 1.896
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:345 A:350 15.0 0.2 -88.0 -179.0 15.0 0.2 0.0 HOH
 2.108
 H
 O
GLY B:345 B:350 13.0 0.173 -90.2 -170.9 13.0 0.173 0.0 HOH
 1.919
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:350 A:350 17.0 0.227 -90.0 -173.2 17.0 0.227 0.0 HOH
 2.805
 N
 O
GLY B:350 B:350 17.0 0.227 -94.6 -176.9 17.0 0.227 0.0 HOH
 2.791
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:350 A:350 12.0 0.16 -65.4 162.8