Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241817560 . C A CCDS2543.1:NM_000030.2:c.1064aCg>aAg_NP_000021.1:p.355T>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 THR A:355 A:355 86.0 0.614 T -49.0 129.2 86.0 0.614 0.0 AOA
GOL
GOL
HOH
 9.520
9.737
8.786
3.798
 OG1
CG2
OG1
OG1
 O3
O1
C3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 THR A:355 A:355 79.0 0.564 T -52.5 134.7 79.0 0.564 0.0 HOH
 9.957
 OG1
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:355 A:355 85.0 0.607 T -50.0 125.9 85.0 0.607 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:355 NA:NA DO NA DO DO DO NA NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 THR A:357 A:355 80.0 0.571 T -58.4 132.0 80.0 0.571 0.0 HOH
 2.757
 O
 O
THR C:357 C:355 79.0 0.564 T -54.3 130.7 79.0 0.564 0.0 HOH
 4.233
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 THR A:355 A:355 88.0 0.629 T -52.8 125.2 88.0 0.629 0.0 HOH
 4.152
 C
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 THR A:357 A:355 85.0 0.607 T -48.3 130.1 85.0 0.607 0.0 BME
HOH
 7.117
2.771
 CG2
OG1
 O1
O
THR B:357 C:355 79.0 0.564 T -54.4 130.4 79.0 0.564 0.0 BME
HOH
 6.847
2.765
 CG2
OG1
 C2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 THR A:357 A:355 81.0 0.579 T -48.2 125.8 81.0 0.579 0.0 GOL
GOL
 9.121
6.663
 OG1
OG1
 O2
O2
THR B:357 B:355 83.0 0.593 T -48.9 125.1 83.0 0.593 0.0 GOL
 9.421
 OG1
 O2
THR C:357 C:355 83.0 0.593 T -48.3 126.5 NA NA NA
THR D:357 D:355 85.0 0.607 T -47.8 126.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 THR A:355 A:355 86.0 0.614 T -45.8 134.3 86.0 0.614 0.0 AOA
GOL
HOH
 9.644
9.130
6.563
 OG1
OG1
CA
 O3
O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 THR A:366 A:355 81.0 0.579 T -55.0 125.9 81.0 0.579 0.0 HOH
 2.795
 O
 O
THR B:366 B:355 83.0 0.593 T -51.4 131.3 83.0 0.593 0.0 HOH
 2.737
 O
 O
THR C:366 E:355 86.0 0.614 T -56.0 126.5 NA NA NA
THR D:366 G:355 85.0 0.607 T -51.6 134.4 NA NA NA
THR E:366 M:355 86.0 0.614 T -53.1 129.2 NA NA NA
THR F:366 N:355 86.0 0.614 T -57.5 130.2 NA NA NA
THR G:366 S:355 85.0 0.607 T -55.5 130.7 NA NA NA
THR H:366 T:355 80.0 0.571 T -49.2 135.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 THR A:357 A:355 82.0 0.586 T -52.0 134.0 82.0 0.586 0.0 HOH
 7.063
 CG2
 O
THR B:357 C:355 81.0 0.579 T -56.9 138.2 81.0 0.579 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 THR A:355 A:355 80.0 0.571 T -58.6 132.5 80.0 0.571 0.0 GOL
HOH
 9.264
7.185
 OG1
OG1
 C3
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 THR A:355 A:355 83.0 0.593 T -52.5 138.2 83.0 0.593 0.0 HOH
 6.928
 OG1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 THR A:350 A:355 84.0 0.6 T -50.8 128.8 84.0 0.6 0.0 HOH
 2.713
 HG23
 O
THR B:350 B:355 75.0 0.536 T -63.9 134.5 75.0 0.536 0.0 HOH
 2.805
 HG23
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 THR A:350 A:355 84.0 0.6 T -50.0 127.5 84.0 0.6 0.0 HOH
 2.828
 HG23
 O
THR B:350 B:355 77.0 0.55 T -61.9 133.1 77.0 0.55 0.0 HOH
 2.713
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 THR A:355 A:355 85.0 0.607 T -52.7 131.6 85.0 0.607 0.0 HOH
 2.654
 O
 O
THR B:355 B:355 73.0 0.521 T -53.4 129.6 73.0 0.521 0.0 HOH
 3.839
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 THR A:355 A:355 82.0 0.586 T -54.4 129.9