Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818137 . C A CCDS2543.1:NM_000030.2:c.1078Cgg>Agg_NP_000021.1:p.360R>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ARG A:360 A:360 15.0 0.067 E -119.6 126.3 15.0 0.067 0.0 PLP
AOA
HOH
 6.580
2.701
2.983
 NH2
NH2
NH1
 O3
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ARG A:360 A:360 11.0 0.049 E -118.2 125.3 11.0 0.049 0.0 PLP
HOH
 6.183
3.141
 NH2
NH2
 O3
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:360 A:360 4.0 0.018 E -118.4 132.2 4.0 0.018 0.0 PMP
HOH
 6.305
7.666
 NH2
O
 N4A
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ARG A:360 A:360 2.0 NA E -117.4 129.5 2.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ARG A:362 A:360 5.0 0.022 E -121.8 127.1 5.0 0.022 0.0 HOH
 2.676
 NH1
 O
ARG C:362 C:360 8.0 0.036 E -121.0 121.3 8.0 0.036 0.0 HOH
 2.654
 NH1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ARG A:360 A:360 5.0 0.022 E -120.3 133.2 5.0 0.022 0.0 PLP
DIO
HOH
 6.998
3.328
7.016
 NH2
NH1
NE
 O3
C1'
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ARG A:362 A:360 13.0 0.058 E -119.7 128.3 13.0 0.058 0.0 SO4
BME
HOH
 9.390
4.182
3.083
 NH2
NH1
NH2
 O1
O1
O
ARG B:362 C:360 7.0 0.031 E -123.1 126.4 7.0 0.031 0.0 SO4
BME
HOH
 9.323
3.193
3.257
 NH2
NH1
NH2
 O2
O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ARG A:362 A:360 13.0 0.058 E -125.1 118.6 13.0 0.058 0.0 GOL
 2.661
 NH2
 O1
ARG B:362 B:360 13.0 0.058 E -125.2 118.5 13.0 0.058 0.0 GOL
 2.813
 NH2
 O2
ARG C:362 C:360 13.0 0.058 E -126.0 119.8 NA NA NA
ARG D:362 D:360 11.0 0.049 E -125.3 118.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ARG A:360 A:360 15.0 0.067 E -119.0 128.1 15.0 0.067 0.0 AOA
HOH
 2.827
2.907
 NH1
NH1
 O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ARG A:371 A:360 9.0 0.04 E -122.5 127.0 9.0 0.04 0.0 PLP
HOH
 6.669
3.003
 NH2
NH1
 O3
O
ARG B:371 B:360 11.0 0.049 E -126.8 128.6 11.0 0.049 0.0 PLP
HOH
 6.602
2.871
 NH2
NH1
 O3
O
ARG C:371 E:360 10.0 0.044 E -125.8 125.5 NA NA NA
ARG D:371 G:360 14.0 0.062 E -125.1 127.5 NA NA NA
ARG E:371 M:360 11.0 0.049 E -124.6 126.8 NA NA NA
ARG F:371 N:360 10.0 0.044 E -124.6 126.7 NA NA NA
ARG G:371 S:360 9.0 0.04 E -127.6 126.8 NA NA NA
ARG H:371 T:360 9.0 0.04 E -121.4 127.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ARG A:362 A:360 8.0 0.036 E -118.4 124.7 8.0 0.036 0.0 SO4
BME
HOH
 9.694
2.591
3.224
 NH2
NH2
NH1
 O4
O1
O
ARG B:362 C:360 7.0 0.031 E -113.8 124.6 7.0 0.031 0.0 SO4
HOH
 9.141
3.330
 NH2
NH2
 O4
O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ARG A:360 A:360 12.0 0.053 E -124.7 130.8 12.0 0.053 0.0 PLP
GOL
HOH
 6.463
2.968
5.671
 NH1
NH1
NH2
 O3
O2
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:360 A:360 11.0 0.049 E -127.4 121.6 11.0 0.049 0.0 PLP
HOH
 6.351
2.908
 NH1
NH2
 O3
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ARG A:355 A:360 7.0 0.031 E -124.6 125.8 7.0 0.031 0.0 PLP
HOH
 5.309
1.843
 HH22
HH12
 HO3
O
ARG B:355 B:360 5.0 0.022 E -124.5 123.4 5.0 0.022 0.0 PLP
HOH
 5.180
2.329
 HH22
HH11
 H4A
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ARG A:355 A:360 6.0 0.027 E -123.0 127.2 6.0 0.027 0.0 PLR
HOH
 4.978
1.979
 HH22
HH12
 HO3
O
ARG B:355 B:360 6.0 0.027 E -123.2 125.3 6.0 0.027 0.0 PLR
HOH
 5.096
2.260
 HH22
HH11
 H4A3
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ARG A:360 A:360 10.0 0.044 E -121.9 127.5 10.0 0.044 0.0 PLP
GOL
HOH
 6.516
9.309
3.001
 NH1
O
NH2
 O3
O3
O
ARG B:360 B:360 8.0 0.036 E -121.2 125.2 8.0 0.036 0.0 PLP
HOH
 6.716
2.656
 NH1
NH2
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ARG A:360 A:360 12.0 0.053 E -128.0 120.8