Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241818138 | . | G | A | CCDS2543.1:NM_000030.2:c.1079cGg>cAg_NP_000021.1:p.360R>Q | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | ARG | A:360 | A:360 | 15.0 | 0.067 | E | -119.6 | 126.3 | 15.0 | 0.067 | 0.0 |
PLP AOA HOH |
6.580 2.701 2.983 |
NH2 NH2 NH1 |
O3 O2 O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:360 | A:360 | 11.0 | 0.049 | E | -118.2 | 125.3 | 11.0 | 0.049 | 0.0 |
PLP HOH |
6.183 3.141 |
NH2 NH2 |
O3 O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:360 | A:360 | 4.0 | 0.018 | E | -118.4 | 132.2 | 4.0 | 0.018 | 0.0 |
PMP HOH |
6.305 7.666 |
NH2 O |
N4A O |
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6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:360 | A:360 | 2.0 | NA | E | -117.4 | 129.5 | 2.0 | NA | NA | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | ARG | A:362 | A:360 | 5.0 | 0.022 | E | -121.8 | 127.1 | 5.0 | 0.022 | 0.0 |
HOH |
2.676 |
NH1 |
O |
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ARG | C:362 | C:360 | 8.0 | 0.036 | E | -121.0 | 121.3 | 8.0 | 0.036 | 0.0 |
HOH |
2.654 |
NH1 |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:360 | A:360 | 5.0 | 0.022 | E | -120.3 | 133.2 | 5.0 | 0.022 | 0.0 |
PLP DIO HOH |
6.998 3.328 7.016 |
NH2 NH1 NE |
O3 C1' O |
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4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:362 | A:360 | 13.0 | 0.058 | E | -119.7 | 128.3 | 13.0 | 0.058 | 0.0 |
SO4 BME HOH |
9.390 4.182 3.083 |
NH2 NH1 NH2 |
O1 O1 O |
||
ARG | B:362 | C:360 | 7.0 | 0.031 | E | -123.1 | 126.4 | 7.0 | 0.031 | 0.0 |
SO4 BME HOH |
9.323 3.193 3.257 |
NH2 NH1 NH2 |
O2 O1 O |
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4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | ARG | A:362 | A:360 | 13.0 | 0.058 | E | -125.1 | 118.6 | 13.0 | 0.058 | 0.0 |
GOL |
2.661 |
NH2 |
O1 |
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ARG | B:362 | B:360 | 13.0 | 0.058 | E | -125.2 | 118.5 | 13.0 | 0.058 | 0.0 |
GOL |
2.813 |
NH2 |
O2 |
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ARG | C:362 | C:360 | 13.0 | 0.058 | E | -126.0 | 119.8 | NA | NA | NA | |||||||||||||
ARG | D:362 | D:360 | 11.0 | 0.049 | E | -125.3 | 118.8 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | ARG | A:360 | A:360 | 15.0 | 0.067 | E | -119.0 | 128.1 | 15.0 | 0.067 | 0.0 |
AOA HOH |
2.827 2.907 |
NH1 NH1 |
O3 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | ARG | A:371 | A:360 | 9.0 | 0.04 | E | -122.5 | 127.0 | 9.0 | 0.04 | 0.0 |
PLP HOH |
6.669 3.003 |
NH2 NH1 |
O3 O |
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ARG | B:371 | B:360 | 11.0 | 0.049 | E | -126.8 | 128.6 | 11.0 | 0.049 | 0.0 |
PLP HOH |
6.602 2.871 |
NH2 NH1 |
O3 O |
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ARG | C:371 | E:360 | 10.0 | 0.044 | E | -125.8 | 125.5 | NA | NA | NA | |||||||||||||
ARG | D:371 | G:360 | 14.0 | 0.062 | E | -125.1 | 127.5 | NA | NA | NA | |||||||||||||
ARG | E:371 | M:360 | 11.0 | 0.049 | E | -124.6 | 126.8 | NA | NA | NA | |||||||||||||
ARG | F:371 | N:360 | 10.0 | 0.044 | E | -124.6 | 126.7 | NA | NA | NA | |||||||||||||
ARG | G:371 | S:360 | 9.0 | 0.04 | E | -127.6 | 126.8 | NA | NA | NA | |||||||||||||
ARG | H:371 | T:360 | 9.0 | 0.04 | E | -121.4 | 127.6 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:362 | A:360 | 8.0 | 0.036 | E | -118.4 | 124.7 | 8.0 | 0.036 | 0.0 |
SO4 BME HOH |
9.694 2.591 3.224 |
NH2 NH2 NH1 |
O4 O1 O |
||
ARG | B:362 | C:360 | 7.0 | 0.031 | E | -113.8 | 124.6 | 7.0 | 0.031 | 0.0 |
SO4 HOH |
9.141 3.330 |
NH2 NH2 |
O4 O |
|||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:360 | A:360 | 12.0 | 0.053 | E | -124.7 | 130.8 | 12.0 | 0.053 | 0.0 |
PLP GOL HOH |
6.463 2.968 5.671 |
NH1 NH1 NH2 |
O3 O2 O |
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4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:360 | A:360 | 11.0 | 0.049 | E | -127.4 | 121.6 | 11.0 | 0.049 | 0.0 |
PLP HOH |
6.351 2.908 |
NH1 NH2 |
O3 O |
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5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | ARG | A:355 | A:360 | 7.0 | 0.031 | E | -124.6 | 125.8 | 7.0 | 0.031 | 0.0 |
PLP HOH |
5.309 1.843 |
HH22 HH12 |
HO3 O |
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ARG | B:355 | B:360 | 5.0 | 0.022 | E | -124.5 | 123.4 | 5.0 | 0.022 | 0.0 |
PLP HOH |
5.180 2.329 |
HH22 HH11 |
H4A O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:355 | A:360 | 6.0 | 0.027 | E | -123.0 | 127.2 | 6.0 | 0.027 | 0.0 |
PLR HOH |
4.978 1.979 |
HH22 HH12 |
HO3 O |
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ARG | B:355 | B:360 | 6.0 | 0.027 | E | -123.2 | 125.3 | 6.0 | 0.027 | 0.0 |
PLR HOH |
5.096 2.260 |
HH22 HH11 |
H4A3 O |
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2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | ARG | A:360 | A:360 | 10.0 | 0.044 | E | -121.9 | 127.5 | 10.0 | 0.044 | 0.0 |
PLP GOL HOH |
6.516 9.309 3.001 |
NH1 O NH2 |
O3 O3 O |
||
ARG | B:360 | B:360 | 8.0 | 0.036 | E | -121.2 | 125.2 | 8.0 | 0.036 | 0.0 |
PLP HOH |
6.716 2.656 |
NH1 NH2 |
O3 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | ARG | A:360 | A:360 | 12.0 | 0.053 | E | -128.0 | 120.8 |