Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818159 . A C CCDS2543.1:NM_000030.2:c.1100aAt>aCt_NP_000021.1:p.367N>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASN A:367 A:367 13.0 0.081 G -94.2 -7.2 13.0 0.081 0.0 GOL
GOL
GOL
HOH
 8.727
7.715
6.797
3.281
 ND2
C
N
CB
 O1
O2
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASN A:367 A:367 13.0 0.081 G -86.0 -14.1 13.0 0.081 0.0 HOH
 3.189
 CB
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:367 A:367 13.0 0.081 G -72.2 -8.7 13.0 0.081 0.0 HOH
 2.918
 CB
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:367 A:367 14.0 0.087 G -72.7 -11.2 14.0 0.087 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASN A:369 A:367 14.0 0.087 G -86.0 -17.0 14.0 0.087 0.0 HOH
 2.755
 OD1
 O
ASN C:369 C:367 12.0 0.075 G -79.7 -16.8 12.0 0.075 0.0 HOH
 2.745
 OD1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASN A:367 A:367 26.0 0.163 G -81.1 10.0 26.0 0.163 0.0 HOH
 3.294
 ND2
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASN A:369 A:367 12.0 0.075 G -83.8 -13.6 12.0 0.075 0.0 HOH
 3.284
 CB
 O
ASN B:369 C:367 13.0 0.081 G -78.1 -12.3 13.0 0.081 0.0 HOH
 3.271
 CB
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASN A:369 A:367 13.0 0.081 G -89.4 -0.6 13.0 0.081 0.0
ASN B:369 B:367 13.0 0.081 G -88.6 -0.4 13.0 0.081 0.0
ASN C:369 C:367 13.0 0.081 G -89.2 -0.1 NA NA NA
ASN D:369 D:367 13.0 0.081 G -88.6 0.4 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASN A:367 A:367 10.0 0.062 G -86.7 -25.2 10.0 0.062 0.0 GOL
GOL
GOL
HOH
 9.123
7.275
7.180
3.250
 ND2
O
N
CB
 O1
C2
O3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASN A:378 A:367 17.0 0.106 G -91.2 -6.4 17.0 0.106 0.0 HOH
 2.785
 ND2
 O
ASN B:378 B:367 18.0 0.113 G -89.3 -1.9 18.0 0.113 0.0 HOH
 2.554
 ND2
 O
ASN C:378 E:367 15.0 0.094 G -89.7 -2.0 NA NA NA
ASN D:378 G:367 18.0 0.113 G -85.8 -4.4 NA NA NA
ASN E:378 M:367 18.0 0.113 G -91.3 -6.9 NA NA NA
ASN F:378 N:367 16.0 0.1 G -93.0 -3.6 NA NA NA
ASN G:378 S:367 18.0 0.113 G -88.2 -5.2 NA NA NA
ASN H:378 T:367 19.0 0.119 G -88.5 -4.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASN A:369 A:367 13.0 0.081 G -90.8 -11.3 13.0 0.081 0.0 HOH
 3.258
 CB
 O
ASN B:369 C:367 14.0 0.087 G -80.9 -8.2 14.0 0.087 0.0 HOH
 7.957
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASN A:367 A:367 19.0 0.119 G -94.1 -15.3 19.0 0.119 0.0 HOH
 3.211
 OD1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASN A:367 A:367 17.0 0.106 G -88.6 -10.9 17.0 0.106 0.0 HOH
 2.382
 OD1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASN A:362 A:367 13.0 0.081 G -83.6 -15.2 13.0 0.081 0.0 HOH
 2.148
 OD1
 O
ASN B:362 B:367 12.0 0.075 G -88.2 -8.6 12.0 0.075 0.0 HOH
 2.575
 OD1
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASN A:362 A:367 13.0 0.081 G -82.4 -18.9 13.0 0.081 0.0 HOH
 2.240
 OD1
 O
ASN B:362 B:367 12.0 0.075 G -86.8 -7.2 12.0 0.075 0.0 HOH
 2.621
 OD1
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASN A:367 A:367 18.0 0.113 G -89.7 -8.3 18.0 0.113 0.0 HOH
 2.646
 OD1
 O
ASN B:367 B:367 18.0 0.113 G -89.6 -4.4 18.0 0.113 0.0 HOH
 2.455
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASN A:367 A:367 8.0 0.05 G -82.1 -12.5