Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818161 . G A CCDS2543.1:NM_000030.2:c.1102Gcc>Acc_NP_000021.1:p.368A>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:368 A:368 1.0 0.009 -83.5 76.8 1.0 0.009 0.0 GOL
GOL
HOH
 3.977
8.410
4.934
 O
N
N
 O2
O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:368 A:368 2.0 0.017 -78.1 74.9 2.0 0.017 0.0 HOH
 4.975
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:368 A:368 2.0 0.017 -93.1 67.5 2.0 0.017 0.0 HOH
 4.861
 N
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:368 A:368 2.0 0.017 -92.4 72.4 2.0 0.017 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:370 A:368 3.0 0.026 -74.2 72.4 3.0 0.026 0.0 HOH
 2.844
 O
 O
ALA C:370 C:368 3.0 0.026 -79.1 76.1 3.0 0.026 0.0 HOH
 3.995
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:368 A:368 1.0 0.009 -100.2 70.6 1.0 0.009 0.0 HOH
 6.151
 CB
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:370 A:368 2.0 0.017 -82.9 81.5 2.0 0.017 0.0 HOH
 3.085
 O
 O
ALA B:370 C:368 2.0 0.017 -79.2 76.4 2.0 0.017 0.0 HOH
 4.075
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:370 A:368 2.0 0.017 -85.9 54.8 2.0 0.017 0.0
ALA B:370 B:368 2.0 0.017 -85.2 55.4 2.0 0.017 0.0
ALA C:370 C:368 2.0 0.017 -84.2 55.3 NA NA NA
ALA D:370 D:368 2.0 0.017 -85.6 55.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:368 A:368 0.0 0.0 -68.3 74.5 0.0 0.0 0.0 GOL
GOL
HOH
 4.140
9.348
4.647
 O
N
N
 O3
C3
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:379 A:368 1.0 0.009 -84.4 79.6 1.0 0.009 0.0 HOH
 3.016
 O
 O
ALA B:379 B:368 0.0 0.0 -88.8 79.7 0.0 0.0 0.0 HOH
 4.292
 O
 O
ALA C:379 E:368 1.0 0.009 -88.4 80.5 NA NA NA
ALA D:379 G:368 1.0 0.009 -88.3 80.9 NA NA NA
ALA E:379 M:368 1.0 0.009 -83.1 82.3 NA NA NA
ALA F:379 N:368 2.0 0.017 -85.9 75.9 NA NA NA
ALA G:379 S:368 2.0 0.017 -90.6 79.7 NA NA NA
ALA H:379 T:368 1.0 0.009 -85.5 79.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:370 A:368 1.0 0.009 -87.5 80.9 1.0 0.009 0.0 HOH
 4.813
 N
 O
ALA B:370 C:368 2.0 0.017 -87.3 71.5 2.0 0.017 0.0 HOH
 6.824
 C
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:368 A:368 1.0 0.009 -73.3 84.9 1.0 0.009 0.0 HOH
 4.831
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:368 A:368 1.0 0.009 -80.8 76.7 1.0 0.009 0.0 HOH
 5.044
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:363 A:368 2.0 0.017 -79.9 82.8 2.0 0.017 0.0 HOH
 2.864
 O
 O
ALA B:363 B:368 3.0 0.026 -84.5 78.1 3.0 0.026 0.0 HOH
 2.647
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:363 A:368 2.0 0.017 -74.5 77.8 2.0 0.017 0.0 HOH
 2.796
 O
 O
ALA B:363 B:368 3.0 0.026 -85.6 80.2 3.0 0.026 0.0 HOH
 2.692
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:368 A:368 2.0 0.017 -79.7 79.5 2.0 0.017 0.0 HOH
 3.382
 O
 O
ALA B:368 B:368 2.0 0.017 -83.7 79.3 2.0 0.017 0.0 HOH
 4.009
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:368 A:368 2.0 0.017 -78.4 72.0