Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 241818183 | . | G | A | CCDS2543.1:NM_000030.2:c.1124cGc>cAc_NP_000021.1:p.375R>H | Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1h0c | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2003-06-12 | ARG | A:375 | A:375 | 156.0 | 0.693 | H | -58.1 | -49.5 | 156.0 | 0.693 | 0.0 |
GOL HOH |
4.246 2.668 |
NH1 NH1 |
O2 O |
||
5og0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:375 | A:375 | 161.0 | 0.716 | H | -57.1 | -37.3 | 161.0 | 0.716 | 0.0 |
HOH |
7.711 |
N |
O |
||
6rv0 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:375 | A:375 | 135.0 | 0.6 | H | -43.9 | -60.2 | 135.0 | 0.6 | 0.0 | ||||||
6rv1 | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:375 | A:375 | 156.0 | 0.693 | H | -48.5 | -54.3 | 156.0 | 0.693 | 0.0 | ||||||
3r9a | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2011-05-11 | ARG | A:377 | A:375 | 86.0 | 0.382 | H | -65.5 | -47.8 | 86.0 | 0.382 | 0.0 |
HOH |
2.664 |
NH2 |
O |
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ARG | C:377 | C:375 | 86.0 | 0.382 | H | -58.8 | -47.1 | 86.0 | 0.382 | 0.0 |
HOH |
2.580 |
O |
O |
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5ofy | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-27 | ARG | A:375 | A:375 | 165.0 | 0.733 | H | -48.6 | -42.3 | 165.0 | 0.733 | 0.0 |
HOH |
5.619 |
CD |
O |
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4kyo | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:377 | A:375 | 96.0 | 0.427 | H | -62.1 | -48.4 | 96.0 | 0.427 | 0.0 |
HOH |
2.693 |
O |
O |
||
ARG | B:377 | C:375 | 134.0 | 0.596 | H | -61.0 | -44.4 | 134.0 | 0.596 | 0.0 |
HOH |
2.614 |
NH2 |
O |
|||||||||
4i8a | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-05-01 | ARG | A:377 | A:375 | 105.0 | 0.467 | H | -55.8 | -46.8 | 105.0 | 0.467 | 0.0 | ||||||
ARG | B:377 | B:375 | 108.0 | 0.48 | H | -56.4 | -46.2 | 108.0 | 0.48 | 0.0 | |||||||||||||
ARG | C:377 | C:375 | 96.0 | 0.427 | H | -57.3 | -45.6 | NA | NA | NA | |||||||||||||
ARG | D:377 | D:375 | 85.0 | 0.378 | H | -57.7 | -44.6 | NA | NA | NA | |||||||||||||
1j04 | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2003-11-11 | ARG | A:375 | A:375 | 162.0 | 0.72 | H | -49.7 | -48.1 | 162.0 | 0.72 | 0.0 |
GOL HOH |
4.253 3.151 |
NH1 O |
O2 O |
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5luc | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2017-09-20 | ARG | A:386 | A:375 | 153.0 | 0.68 | H | -61.5 | -51.3 | 153.0 | 0.68 | 0.0 |
HOH |
2.871 |
NH1 |
O |
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ARG | B:386 | B:375 | 151.0 | 0.671 | H | -61.3 | -47.0 | 151.0 | 0.671 | 0.0 |
HOH |
2.812 |
NH1 |
O |
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ARG | C:386 | E:375 | 159.0 | 0.707 | H | -62.0 | -50.8 | NA | NA | NA | |||||||||||||
ARG | D:386 | G:375 | 156.0 | 0.693 | H | -60.4 | -48.9 | NA | NA | NA | |||||||||||||
ARG | E:386 | M:375 | 152.0 | 0.676 | H | -64.7 | -47.1 | NA | NA | NA | |||||||||||||
ARG | F:386 | N:375 | 161.0 | 0.716 | H | -67.4 | -42.4 | NA | NA | NA | |||||||||||||
ARG | G:386 | S:375 | 158.0 | 0.702 | H | -60.6 | -48.9 | NA | NA | NA | |||||||||||||
ARG | H:386 | T:375 | 153.0 | 0.68 | H | -66.8 | -47.9 | NA | NA | NA | |||||||||||||
4kxk | 1 | P21549 | 99.49 | 0.0 |
X-RAY |
2014-11-19 | ARG | A:377 | A:375 | 101.0 | 0.449 | H | -63.5 | -46.0 | 101.0 | 0.449 | 0.0 | ||||||
ARG | B:377 | C:375 | 103.0 | 0.458 | H | -63.4 | -47.6 | 103.0 | 0.458 | 0.0 |
HOH |
9.087 |
N |
O |
|||||||||
4cbr | 1 | P21549 | 99.23 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:375 | A:375 | 155.0 | 0.689 | H | -55.9 | -43.6 | 155.0 | 0.689 | 0.0 |
HOH |
6.990 |
NE |
O |
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4cbs | 1 | P21549 | 98.72 | 0.0 |
X-RAY |
2014-07-09 | ARG | A:375 | A:375 | 131.0 | 0.582 | H | -62.1 | -44.9 | 131.0 | 0.582 | 0.0 |
HOH |
5.704 |
N |
O |
||
5f9s | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2016-12-21 | ARG | A:370 | A:375 | 69.0 | 0.307 | H | -63.9 | -44.0 | 69.0 | 0.307 | 0.0 |
HOH |
1.777 |
HH21 |
O |
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ARG | B:370 | B:375 | 150.0 | 0.667 | H | -61.4 | -44.0 | 150.0 | 0.667 | 0.0 |
HOH |
2.812 |
HH11 |
O |
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5hhy | 1 | P21549 | 100.0 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:370 | A:375 | 89.0 | 0.396 | H | -62.7 | -45.0 | 89.0 | 0.396 | 0.0 |
HOH |
1.961 |
HE |
O |
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ARG | B:370 | B:375 | 122.0 | 0.542 | H | -62.9 | -44.1 | 122.0 | 0.542 | 0.0 |
HOH |
1.873 |
HH22 |
O |
|||||||||
2yob | 1 | P21549 | 99.74 | 0.0 |
X-RAY |
2013-10-30 | ARG | A:375 | A:375 | 121.0 | 0.538 | H | -63.8 | -45.0 | 121.0 | 0.538 | 0.0 |
HOH |
2.696 |
NH1 |
O |
||
ARG | B:375 | B:375 | 88.0 | 0.391 | H | -63.4 | -44.4 | 88.0 | 0.391 | 0.0 |
HOH |
2.647 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p21549-f1 | 1 | P21549 | 100.0 | 0.0 | ARG | A:375 | A:375 | 144.0 | 0.64 | H | -55.4 | -51.7 |