Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818185 . G A CCDS2543.1:NM_000030.2:c.1126Gtg>Atg_NP_000021.1:p.376V>M Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 VAL A:376 A:376 1.0 0.006 H -69.8 -20.3 1.0 0.006 0.0 GOL
HOH
 8.500
4.771
 N
N
 O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 VAL A:376 A:376 0.0 0.0 H -79.5 -27.5 0.0 0.0 0.0 HOH
 8.124
 CG2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:376 A:376 1.0 0.006 H -63.1 -27.3 1.0 0.006 0.0 HOH
 8.189
 CG2
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:376 A:376 11.0 0.071 H -66.5 -31.1 11.0 0.071 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 VAL A:378 A:376 0.0 0.0 H -67.6 -33.5 0.0 0.0 0.0 HOH
 4.645
 N
 O
VAL C:378 C:376 1.0 0.006 H -73.7 -32.7 1.0 0.006 0.0 HOH
 4.637
 N
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 VAL A:376 A:376 0.0 0.0 H -75.1 -31.8 0.0 0.0 0.0 HOH
 7.272
 N
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 VAL A:378 A:376 1.0 0.006 H -66.2 -38.0 1.0 0.006 0.0 HOH
 4.661
 N
 O
VAL B:378 C:376 1.0 0.006 H -75.2 -33.4 1.0 0.006 0.0 HOH
 4.984
 N
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 VAL A:378 A:376 1.0 0.006 H -73.5 -28.1 1.0 0.006 0.0
VAL B:378 B:376 0.0 0.0 H -72.3 -27.5 0.0 0.0 0.0
VAL C:378 C:376 1.0 0.006 H -73.5 -27.0 NA NA NA
VAL D:378 D:376 1.0 0.006 H -73.6 -27.8 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 VAL A:376 A:376 0.0 0.0 H -73.4 -31.9 0.0 0.0 0.0 GOL
HOH
 7.661
4.949
 N
N
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 VAL A:387 A:376 1.0 0.006 H -67.8 -32.5 1.0 0.006 0.0 HOH
 4.669
 N
 O
VAL B:387 B:376 1.0 0.006 H -74.5 -30.3 1.0 0.006 0.0 HOH
 4.803
 N
 O
VAL C:387 E:376 2.0 0.013 H -65.5 -34.6 NA NA NA
VAL D:387 G:376 1.0 0.006 H -71.7 -31.4 NA NA NA
VAL E:387 M:376 1.0 0.006 H -71.4 -31.7 NA NA NA
VAL F:387 N:376 1.0 0.006 H -74.1 -30.1 NA NA NA
VAL G:387 S:376 2.0 0.013 H -70.4 -33.0 NA NA NA
VAL H:387 T:376 2.0 0.013 H -72.2 -30.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 VAL A:378 A:376 1.0 0.006 H -66.8 -29.5 1.0 0.006 0.0 HOH
 9.219
 CB
 O
VAL B:378 C:376 1.0 0.006 H -71.6 -21.7 1.0 0.006 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 VAL A:376 A:376 1.0 0.006 H -73.6 -27.6 1.0 0.006 0.0 HOH
 7.923
 CG2
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 VAL A:376 A:376 2.0 0.013 H -72.6 -32.7 2.0 0.013 0.0 HOH
 7.755
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 VAL A:371 A:376 0.0 0.0 H -75.1 -31.7 0.0 0.0 0.0 HOH
 4.620
 N
 O
VAL B:371 B:376 1.0 0.006 H -72.3 -29.2 1.0 0.006 0.0 HOH
 4.854
 N
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 VAL A:371 A:376 0.0 0.0 H -75.0 -34.2 0.0 0.0 0.0 HOH
 4.440
 N
 O
VAL B:371 B:376 1.0 0.006 H -71.7 -30.8 1.0 0.006 0.0 HOH
 4.883
 N
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 VAL A:376 A:376 1.0 0.006 H -71.6 -31.9 1.0 0.006 0.0 HOH
 4.723
 N
 O
VAL B:376 B:376 0.0 0.0 H -72.7 -35.8 0.0 0.0 0.0 HOH
 4.611
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 VAL A:376 A:376 0.0 0.0 H -68.8 -31.6