Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818203 . G A CCDS2543.1:NM_000030.2:c.1144Gcg>Acg_NP_000021.1:p.382A>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ALA A:382 A:382 11.0 0.096 H -45.9 -53.7 11.0 0.096 0.0 HOH
 6.820
 N
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ALA A:382 A:382 13.0 0.113 H -52.1 -51.0 13.0 0.113 0.0 HOH
 9.086
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:382 A:382 16.0 0.139 H -53.3 -44.7 16.0 0.139 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ALA A:382 A:382 29.0 0.252 H -45.9 -51.6 29.0 0.252 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ALA A:384 A:382 18.0 0.157 H -74.8 -32.5 18.0 0.157 0.0 HOH
 3.450
 CB
 O
ALA C:384 C:382 16.0 0.139 H -65.2 -37.1 16.0 0.139 0.0 HOH
 3.727
 CB
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ALA A:382 A:382 12.0 0.104 H -56.4 -49.6 12.0 0.104 0.0
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ALA A:384 A:382 20.0 0.174 H -61.3 -43.6 20.0 0.174 0.0 HOH
 3.851
 N
 O
ALA B:384 C:382 6.0 0.052 H -60.3 -37.9 6.0 0.052 0.0 HOH
 3.899
 CB
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ALA A:384 A:382 7.0 0.061 H -55.6 -48.9 7.0 0.061 0.0
ALA B:384 B:382 13.0 0.113 H -52.3 -46.3 13.0 0.113 0.0
ALA C:384 C:382 5.0 0.043 H -54.5 -46.6 NA NA NA
ALA D:384 D:382 13.0 0.113 H -52.7 -46.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ALA A:382 A:382 13.0 0.113 H -53.0 -50.5 13.0 0.113 0.0 HOH
 5.958
 CB
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ALA A:393 A:382 12.0 0.104 H -66.3 -41.2 12.0 0.104 0.0 HOH
 3.519
 CB
 O
ALA B:393 B:382 20.0 0.174 H -63.2 -39.7 20.0 0.174 0.0 HOH
 3.628
 CA
 O
ALA C:393 E:382 14.0 0.122 H -63.0 -40.5 NA NA NA
ALA D:393 G:382 19.0 0.165 H -67.3 -39.4 NA NA NA
ALA E:393 M:382 11.0 0.096 H -65.0 -42.0 NA NA NA
ALA F:393 N:382 14.0 0.122 H -70.7 -36.4 NA NA NA
ALA G:393 S:382 15.0 0.13 H -69.1 -39.6 NA NA NA
ALA H:393 T:382 12.0 0.104 H -60.7 -42.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ALA A:384 A:382 20.0 0.174 H -60.7 -50.0 20.0 0.174 0.0
ALA B:384 C:382 19.0 0.165 H -58.5 -50.1 19.0 0.165 0.0 HOH
 4.537
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ALA A:382 A:382 12.0 0.104 H -55.5 -47.5 12.0 0.104 0.0 HOH
 3.411
 CB
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ALA A:382 A:382 15.0 0.13 H -57.9 -42.4 15.0 0.13 0.0 HOH
 3.746
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ALA A:377 A:382 12.0 0.104 H -64.6 -39.9 12.0 0.104 0.0 HOH
 3.010
 HB2
 O
ALA B:377 B:382 19.0 0.165 H -62.8 -44.1 19.0 0.165 0.0 HOH
 4.993
 N
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ALA A:377 A:382 12.0 0.104 H -62.6 -39.7 12.0 0.104 0.0 HOH
 2.891
 HB2
 O
ALA B:377 B:382 21.0 0.183 H -61.0 -47.5 21.0 0.183 0.0 HOH
 5.065
 N
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ALA A:382 A:382 27.0 0.235 H -63.1 -44.5 27.0 0.235 0.0 HOH
 2.928
 O
 O
ALA B:382 B:382 24.0 0.209 H -63.1 -36.8 24.0 0.209 0.0 HOH
 3.947
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ALA A:382 A:382 15.0 0.13 H -64.0 -42.8