Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241818220 . C A CCDS2543.1:NM_000030.2:c.1161tgC>tgA_NP_000021.1:p.387C>* Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 CYS A:387 A:387 10.0 0.074 S -87.7 138.7 10.0 0.074 0.0 HOH
 3.664
 SG
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 CYS A:387 A:387 14.0 0.104 S -96.1 148.4 14.0 0.104 0.0 HOH
 5.173
 SG
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 CYS A:387 A:387 13.0 0.096 S -74.4 142.8 13.0 0.096 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 CYS A:387 A:387 14.0 NA -61.5 144.0 14.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 CYS A:389 A:387 17.0 0.126 -115.8 1.5 17.0 0.126 0.0 HOH
 2.761
 O
 O
CYS C:389 C:387 12.0 0.089 -96.2 -5.8 12.0 0.089 0.0 HOH
 2.577
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 CYS A:387 A:387 7.0 NA S -79.7 120.8 7.0 NA NA
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 CYS A:389 A:387 14.0 0.104 -110.5 -9.4 14.0 0.104 0.0 HOH
 2.780
 O
 O
CYS B:389 C:387 13.0 0.096 -110.6 0.3 13.0 0.096 0.0 HOH
 2.631
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 CYS A:389 A:387 18.0 0.133 S -74.1 152.7 18.0 0.133 0.0
CYS B:389 B:387 15.0 0.111 S -83.4 158.4 15.0 0.111 0.0
CYS C:389 C:387 17.0 0.126 S -75.2 147.3 NA NA NA
CYS D:389 D:387 16.0 0.119 S -81.8 158.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 CYS A:387 A:387 11.0 0.081 S -76.3 143.9 11.0 0.081 0.0 HOH
 3.112
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 CYS A:398 A:387 10.0 0.074 S -76.5 143.6 10.0 0.074 0.0 HOH
 2.721
 O
 O
CYS B:398 B:387 12.0 0.089 S -80.6 149.1 12.0 0.089 0.0 HOH
 2.712
 O
 O
CYS C:398 E:387 11.0 0.081 S -83.8 148.6 NA NA NA
CYS D:398 G:387 12.0 0.089 S -82.7 148.8 NA NA NA
CYS E:398 M:387 12.0 0.089 S -75.4 145.3 NA NA NA
CYS F:398 N:387 11.0 0.081 S -84.4 142.8 NA NA NA
CYS G:398 S:387 11.0 0.081 S -77.7 144.0 NA NA NA
CYS H:398 T:387 11.0 0.081 S -80.6 147.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 CYS A:389 A:387 14.0 0.104 -131.0 -6.3 14.0 0.104 0.0
CYS B:389 C:387 16.0 0.119 -132.1 -3.5 15.0 0.111 0.008 D:P50542:0.007
 HOH
 8.504
 N
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 CYS A:387 A:387 17.0 0.126 -70.7 -52.5 17.0 0.126 0.0 HOH
 2.486
 SG
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 CYS A:387 A:387 15.0 0.111 -66.8 133.6 15.0 0.111 0.0
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 CYS A:382 A:387 10.0 0.074 S -77.5 137.0 10.0 0.074 0.0 HOH
 2.779
 HB3
 O
CYS B:382 B:387 11.0 0.081 S -90.0 144.4 11.0 0.081 0.0 HOH
 2.582
 HA
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 CYS A:382 A:387 11.0 0.081 S -75.7 139.5 11.0 0.081 0.0 HOH
 2.707
 HA
 O
CYS B:382 B:387 11.0 0.081 S -91.7 141.2 11.0 0.081 0.0 HOH
 2.628
 HA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 CYS A:387 A:387 11.0 0.081 S -69.9 144.4