Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1558987 . G A CCDS13019.1:NM_006065.3:c.430Cgc>Tgc_NP_006056.2:p.144R>C Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 87.81 0.0 X-RAY
 2009-07-21 ARG A:114 A:114 77.0 0.342 E -97.9 122.1 77.0 0.342 0.0 HOH
 3.727
 CG
 O
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 ARG A:115 A:115 144.0 0.64 E -84.1 107.8 144.0 0.64 0.0 HOH
 3.149
 NH2
 O
ARG B:115 B:115 158.0 0.702 -53.6 142.3 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 ARG A:115 A:115 123.0 0.547 E -123.3 155.7 123.0 0.547 0.0 HOH
 3.429
 NH2
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 ARG A:115 A:115 185.0 0.822 -68.2 360.0 185.0 0.822 0.0 HOH
 3.118
 NH1
 O
ARG B:115 B:115 153.0 0.68 -120.4 127.9 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:115 S:115 210.0 0.933 -145.5 360.0 210.0 0.933 0.0 HOH
 8.640
 O
 O
ARG F:115 NA:NA DO NA DO DO DO NA NA NA
ARG I:115 NA:NA DO NA DO DO DO NA NA NA
ARG L:115 NA:NA DO NA DO DO DO NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:115 S:115 174.0 0.773 64.5 100.1 172.0 0.764 0.009 B:None:0.009
 HOH
 2.330
 NH2
 O
ARG F:115 C:115 161.0 0.716 E -111.3 165.3 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:115 C:115 195.0 0.867 -101.9 360.0 184.0 0.818 0.049 B:None:0.049
 HOH
 4.242
 NH1
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:115 S:115 148.0 0.658 E -77.5 152.3 148.0 0.658 0.0 HOH
 2.985
 NH2
 O
ARG F:115 C:115 159.0 0.707 -61.2 179.5 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG A:115 S:115 107.0 0.476 E -78.0 111.1 107.0 0.476 0.0 HOH
 4.877
 O
 O
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 ARG C:115 H:115 163.0 0.724 E -92.7 118.9 163.0 0.724 0.0 HOH
 5.203
 O
 O
ARG F:115 G:115 136.0 0.604 E -92.5 97.7 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 ARG C:113 S:115 155.0 0.689 E -81.6 124.4 155.0 0.689 0.0 HOH
 4.072
 N
 O
2jjs 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ARG A:114 A:114 137.0 0.609 E -95.7 115.5 137.0 0.609 0.0 HOH
 3.819
 CA
 O
ARG B:114 B:114 123.0 0.547 E -95.6 120.9 NA NA NA
2jjt 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ARG A:114 A:114 50.0 NA E -98.8 170.9 50.0 NA NA
ARG B:114 B:114 56.0 NA E -104.2 139.4 NA NA NA
2uv3 1 P78324 88.24 2e-69 X-RAY
 2007-03-27 ARG A:114 A:114 121.0 0.538 E -86.8 120.3 121.0 0.538 0.0 MES
HOH
 8.036
2.743
 NH1
O
 O1S
O
ARG B:114 B:114 126.0 0.56 E -82.4 119.2 126.0 0.56 0.0 MES
HOH
 7.924
2.832
 NH1
O
 O3S
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 ARG A:144 A:144 90.0 0.4 E -94.8 118.8
af-p78324-f1 1 P78324 86.98 0.0 ARG A:145 A:145 100.0 0.444 E -96.8 124.1