Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1559030 . G A CCDS13019.1:NM_006065.3:c.387gaC>gaT_NP_006056.2:p.129D>D Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 ASP A:100 A:100 116.0 0.773 S -117.7 150.1 116.0 0.773 0.0 HOH
 2.910
 OD1
 O
ASP B:100 B:100 175.0 1.0 360.0 143.6 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 ASP A:100 A:100 118.0 0.787 -138.8 145.4 116.0 0.773 0.014 B:Q08722:0.013
 HOH
 2.717
 O
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 ASP A:100 A:100 110.0 0.733 S -124.9 172.6 110.0 0.733 0.0 HOH
 2.655
 OD2
 O
ASP B:100 B:100 118.0 0.787 S -99.1 167.3 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ASP C:100 S:100 119.0 0.793 S 118.3 152.3 119.0 0.793 0.0 HOH
 4.064
 C
 O
ASP F:100 E:100 131.0 0.873 S 34.7 155.6 NA NA NA
ASP I:100 I:100 111.0 0.74 S -154.5 139.1 NA NA NA
ASP L:100 M:100 141.0 0.94 S 67.5 139.6 NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ASP C:100 S:100 128.0 0.853 S -108.0 161.4 128.0 0.853 0.0 HOH
 8.984
 CB
 O
ASP F:100 C:100 128.0 0.853 S -111.8 163.7 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ASP C:100 C:100 104.0 0.693 S -156.0 176.9 104.0 0.693 0.0 HOH
 2.518
 OD1
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ASP C:100 S:100 122.0 0.813 S -150.7 160.6 108.0 0.72 0.093 B:None:0.093
 HOH
 4.065
 CA
 O
ASP F:100 C:100 128.0 0.853 S -152.4 153.6 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 ASP A:100 S:100 82.0 0.547 105.4 140.3 82.0 0.547 0.0
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 ASP C:100 H:100 98.0 0.653 S -123.0 -162.2 37.0 0.247 0.406 B:None:0.253
A:None:0.173
 HOH
 3.020
 OD1
 O
ASP F:100 G:100 94.0 0.627 S -146.0 -169.2 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 ASP C:98 S:100 130.0 0.867 S -126.6 155.5 130.0 0.867 0.0 HOH
 3.900
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 ASP A:129 A:129 124.0 0.827 S -112.1 145.1
af-p78324-f1 1 P78324 86.98 0.0 ASP A:130 A:130 122.0 0.813 S -116.8 149.2