Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 1559155 . G A CCDS13019.1:NM_006065.3:c.262Cgg>Tgg_NP_006056.2:p.88R>W Homo sapiens signal regulatory protein beta 1 (SIRPB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2wng 1 P78324 87.81 0.0 X-RAY
 2009-07-21 ARG A:59 A:59 92.0 0.409 T -83.4 -21.6 92.0 0.409 0.0 HOH
 4.172
 NH1
 O
2jju 1 O00241 100.0 3e-82 X-RAY
 2008-08-05 ARG A:59 A:59 92.0 0.409 T -86.5 -5.5 92.0 0.409 0.0 SO4
HOH
 3.082
2.860
 NE
O
 O1
O
ARG B:59 B:59 93.0 0.413 T -78.1 -8.3 NA NA NA
4cmm 1 P78324 89.92 9e-74 X-RAY
 2014-02-26 ARG A:59 A:59 100.0 0.444 T -76.4 -5.5 100.0 0.444 0.0 HOH
 2.860
 O
 O
2jjv 1 Q5TFQ8 89.92 1e-73 X-RAY
 2008-08-05 ARG A:59 A:59 91.0 0.404 T -97.1 4.7 91.0 0.404 0.0 SO4
HOH
 9.977
3.137
 NH1
O
 O2
O
ARG B:59 B:59 105.0 0.467 T -74.4 -15.4 NA NA NA
6nmr 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:59 S:59 91.0 0.404 T -86.2 7.7 91.0 0.404 0.0 HOH
 4.656
 N
 O
ARG F:59 E:59 127.0 0.564 T -98.0 11.2 NA NA NA
ARG I:59 I:59 125.0 0.556 T 29.6 53.1 NA NA NA
ARG L:59 M:59 106.0 0.471 T -53.9 -18.8 NA NA NA
6nms 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:59 S:59 98.0 0.436 T -83.9 -7.3 98.0 0.436 0.0 HOH
 2.380
 O
 O
ARG F:59 C:59 103.0 0.458 T -83.7 -1.7 NA NA NA
6nmt 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:59 C:59 104.0 0.462 T -91.9 -4.6 104.0 0.462 0.0 HOH
 2.813
 O
 O
6nmu 3 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG C:59 S:59 117.0 0.52 T -113.6 24.2 38.0 0.169 0.351 B:None:0.298
A:None:0.062
 HOH
 3.347
 N
 O
ARG F:59 C:59 113.0 0.502 T -94.7 -8.6 NA NA NA
6nmv 1 P78324 89.08 1e-72 X-RAY
 2019-08-07 ARG A:59 S:59 99.0 0.44 T -108.4 20.9 99.0 0.44 0.0
6bit 3 P78324 89.74 3e-72 X-RAY
 2017-12-06 ARG C:59 H:59 101.0 0.449 T -84.7 -10.2 84.0 0.373 0.076 B:None:0.076
 HOH
 2.912
 N
 O
ARG F:59 G:59 104.0 0.462 T -92.6 -6.5 NA NA NA
7kpg 3 P78324 89.57 4e-70 X-RAY
 2020-12-16 ARG C:57 S:59 105.0 0.467 T -74.7 -16.8 105.0 0.467 0.0 HOH
 3.141
 N
 O
2jjs 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ARG A:59 A:59 89.0 0.396 T -91.5 -10.3 89.0 0.396 0.0 NAG
HOH
 3.073
3.008
 O
N
 O4
O
ARG B:59 B:59 90.0 0.4 T -92.7 -8.5 NA NA NA
2jjt 1 P78324 88.24 2e-69 X-RAY
 2008-08-05 ARG A:59 A:59 87.0 0.387 T -102.3 -24.3 87.0 0.387 0.0
ARG B:59 B:59 97.0 0.431 S -92.5 -28.4 NA NA NA
2uv3 1 P78324 88.24 2e-69 X-RAY
 2007-03-27 ARG A:59 A:59 90.0 0.4 T -88.4 -12.9 90.0 0.4 0.0 SO4
HOH
 2.928
2.673
 NE
O
 O2
O
ARG B:59 B:59 88.0 0.391 T -92.9 -0.6 88.0 0.391 0.0 HOH
 2.958
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o00241-f1 1 O00241 100.0 0.0 ARG A:88 A:88 83.0 0.369 T -86.9 -14.4
af-p78324-f1 1 P78324 86.98 0.0 ARG A:89 A:89 91.0 0.404 T -89.9 -7.9